| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_2043 |
|---|
| Symbol | |
|---|
| ID | 5058506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 2315040 |
|---|
| End bp | 2316305 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640474308 |
|---|
| Product | Serine-type D-Ala-D-Ala carboxypeptidase |
|---|
| Protein accession | YP_001158874 |
|---|
| Protein GI | 145594577 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.956781 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAGCA TTCCTCGGGC GTTGAAGATC ATGATCGCCA GTGCGGCGCT GACCGCCACG
GCCTTTGTGG TGCCCACATC TGCTGCCGCG CTACCCACTC AGAGTGCTGG TGGAGGCTCC
TCCGGCGGGC TGGATCGGGG TGCGTTGCGC ACCGCACTCG CCGCGGTGCC CGAGGCCGGT
GTTCCCGGTG CGTTGGCGGC CGTGCGCGAT GGCCGGCACG ACTGGCGCGG CAGCGCCGGC
CAGGCGCACC TGACCAGCCC TCGACCGATG CAGCCGCAGC TGCGGCACCG CATCGGCAGC
ATTACCAAGA CGTTCGTCGC CACCACTGTG CTGCAGCTCG TTGACGAGGG CCGGCTGGGC
CTCGACGATC CGATCGGGGA GCTGCTGCCG GAGATCGTGT CGGGTGAACG TGGCGCCGAA
GTCACCGTCA GGATGCTGTT GAACCACACC AGCGGCATCG GCAACTACAC CAACGCGATG
CTCGACTCGT ATGCTGCGAT CAACCAGATG CAGGTCACGA CGTACGCTCC GGTGGAGCTG
GTTGCGATGG GCCTGGCCAT GCCGCCGACC AACGCACCCG GGGCTGAGTT CAGCTACTCG
AACACGAACT ACATCCTGGC GGGCTTACTG ATCGAGTCGA TCACTGGAAA CCCGGCGGCG
GCAGAGGTAC AGCAGCGCAT TCTGCGGCCA CTGAAGCTCC GGGGGACATC GTTCCCTGGT
ACTGATCCGA CTATTCATGG CCCACACAGC GGTGCCTACT TCGCCCCGTT AGGGGTTCGT
GACCTCAGCG AGTTCAACAT GAGCTGGGGG TGGACGGCAG GCGAGATGAT CGGTACCACG
GCGGATCTGA ACACGTTCTT CCGGGCGTTG CTCGGCGGTG ATCTGCTCAG CCCGTCCGCC
CTCAGTGAGA TGCTCACCGG GGTGCCGATG CTGCCAGATC TCCCCGAAGC TGGTAGCTAT
GGTCTCGGCA TCCTTTCCCT GCCCACCCCT TGCGGTGAGT TCTGGGGCCA TGACGGTGTG
GTGTTCGGTC ATCTGATGTT TTCGATGCAC AGCCGGGATG GTGCACGTCA GGTGTCGTCC
GGGATCAACA TCAGTCACTA CCGGACCGGC CTGCCTGATG CGCATCCGAT CGATGTCGCC
TGGCAGTCGT TCCACATGAC TGCGATGTGC CCGACCAGCG AGACAAGCAG CCGCGCGGCA
GGGTCCGTGC AGCTGCCCAG TGTGACCCGA ATGCCGGGCA ACGACGCAGC GGTCGCGGCG
CTCTGA
|
|---|
| Protein sequence | MSSIPRALKI MIASAALTAT AFVVPTSAAA LPTQSAGGGS SGGLDRGALR TALAAVPEAG
VPGALAAVRD GRHDWRGSAG QAHLTSPRPM QPQLRHRIGS ITKTFVATTV LQLVDEGRLG
LDDPIGELLP EIVSGERGAE VTVRMLLNHT SGIGNYTNAM LDSYAAINQM QVTTYAPVEL
VAMGLAMPPT NAPGAEFSYS NTNYILAGLL IESITGNPAA AEVQQRILRP LKLRGTSFPG
TDPTIHGPHS GAYFAPLGVR DLSEFNMSWG WTAGEMIGTT ADLNTFFRAL LGGDLLSPSA
LSEMLTGVPM LPDLPEAGSY GLGILSLPTP CGEFWGHDGV VFGHLMFSMH SRDGARQVSS
GINISHYRTG LPDAHPIDVA WQSFHMTAMC PTSETSSRAA GSVQLPSVTR MPGNDAAVAA
L
|
|---|
| |