| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1924 |
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| Symbol | xerD |
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| ID | 5058386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | + |
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| Start bp | 2199137 |
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| End bp | 2200114 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 640474197 |
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| Product | site-specific tyrosine recombinase XerD |
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| Protein accession | YP_001158764 |
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| Protein GI | 145594467 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.239497 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGCCG AGGCCGAACC CGATCCCGCG CCGGCCCTAC GCCGCGCCGT CCGCGGCTAC
CTGGACCACC TTGCCGTTGA GCGGGGACTC GCGGCGAACA CACTCGCCTC GTACCGTCGG
GACCTGGCCC ACTACCTCGA CACCCTCGCG TCGATCGGGG TGACCGATCT GGCGTCGGTC
GCCCCGGGCC AGGTGGAAGC CCACCTGGCC CGGCTGCGCG TCGGGAACGA GGGACGCCGA
CCACTCGCGG CGTCCTCCGC GGCGCGGGCC GTCAGCGCCG TGCGTGGCCT GCATCGCTTC
GCGCTGCGCG AGGGCCTGAC CGGTGCGGAC CCGAGCCGTG ATGTCCGCCC ACCGGCGCCG
CCCCGCCGGC TGCCCCGGGC GCTGCCCGTT GACGACGTGA TCCGGTTGCT GGAAGCCGTC
GGCCCGGTCT CCGCCGCCGG CGGGCAGGCG CCACTCGGGC TGCGTGACCG GGCACTGCTG
GAGTTCCTGT ACGGCACCGG CGCACGGATC TCCGAGGCGG TCGGCGCCGC CGTTGACGAC
CTCGACCTCG ACGCCGGCGC GGTACTGCTG CGGGGCAAGG GCGGGCGGAA CCGGCTGGTC
CCGATCGGCG GGTACGCCGT GGCTGCGCTG CACGCCTACC TGGTGCGCGC CCGCCCCGGC
CTCGCCGCCG CCGGCGGAGG CACCCCGAGG GTCTTCCTCA ACTCCCGCGG CGGCCCGTTG
TCTCGGCAGG GCGCCTGGAC GATCCTGCGG AATGCCGCCC GGCGGGCCGG ACTGTCGGAC
GTCGGGCCGC AGGCCGTCTC CCCGCACACC CTGCGTCACT CCTACGCCAC CCACCTGCTC
GACGGTGGCG CCGACGTGCG CGTGGTGCAG GAACTACTCG GCCACGCCTC GGTCACCACC
ACCCAGGTGT ACACGCTGGT CACTGTCGAA CGGCTCCGTG AGGTGTACGC GACAGCCCAC
CCGCGGGCGC TCGGTTGA
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| Protein sequence | MTAEAEPDPA PALRRAVRGY LDHLAVERGL AANTLASYRR DLAHYLDTLA SIGVTDLASV
APGQVEAHLA RLRVGNEGRR PLAASSAARA VSAVRGLHRF ALREGLTGAD PSRDVRPPAP
PRRLPRALPV DDVIRLLEAV GPVSAAGGQA PLGLRDRALL EFLYGTGARI SEAVGAAVDD
LDLDAGAVLL RGKGGRNRLV PIGGYAVAAL HAYLVRARPG LAAAGGGTPR VFLNSRGGPL
SRQGAWTILR NAARRAGLSD VGPQAVSPHT LRHSYATHLL DGGADVRVVQ ELLGHASVTT
TQVYTLVTVE RLREVYATAH PRALG
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