| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1900 |
|---|
| Symbol | |
|---|
| ID | 5058359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 2167265 |
|---|
| End bp | 2168098 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640474170 |
|---|
| Product | UspA domain-containing protein |
|---|
| Protein accession | YP_001158740 |
|---|
| Protein GI | 145594443 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0128633 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.168058 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGAC CCGTAGTGGT AGGAGTGGAC GGCTCACCGT CGAGCCTGGT GGCGGCGGAG
CATGCCGCCC GCGCCGCGGT GCTGCGGTCG CGACCGCTGC ACCTGGTGCA CGGCTACCTG
CATCCGTCGG GGTACGGGGT TCCGATCAAC CCGTACGAGT TGGGAATTCC GAAGCCGAAC
GACGAGGCGC AGTCGATGCT GGATCAGCTA GCGGCCGACC TGGCCGACCG CTGGCCCGGG
CTGACCACCG AGGTACGGCA GGTCGCCGGC GGGCCGGGAG CCACGCTGGT GGAGGAGTCC
CGCCGAGCGG AGCTGGTCGT GGTGGGTAGC CGGGGTCACG GCGGCTTCGC CGGGCTGCTG
CTCGGCTCGG TCGGTTCTCA GGTCACGGCG CACGCCCAGA GCCCGGTGCT GGTGGTCCGC
CCCACCGAGG GGCCGATTGC GGTGGGCGGG CCGGTGCTGG TCGGGGTGGA TGGGTCGGAG
TTGGCGGAGG TGGCGGTCGG GCAGGCAGCC GACGAGGCCA CCCGGCAACA GACCGAGCTG
GTGCTGGTGC ACGTCCACCC ACCCGGTGCG ACCGACGCCG CGGAGGTGCT CGACACCGCT
GCGGCGGCGG TCCGCGGCAG CCATCCGGGG CTGACCGTGA CCACCCGACA GCTGCGGGCG
GAGAAGCCGG ACCAGGCGCT GATCGACGCG AGCCGGGACG CTGCCCTGAT GGTCGTGGGC
AGCCGGGGGC GGGGCGGGTT CACCGGGATG CTGCTCGGCT CGGTCAGCCA GTCTCTGGTG
CAGCACGCCC ACTGTCCGGT GCTCGTGGCC CACCCGTACG GTCGAGCACG CTGA
|
|---|
| Protein sequence | MNRPVVVGVD GSPSSLVAAE HAARAAVLRS RPLHLVHGYL HPSGYGVPIN PYELGIPKPN
DEAQSMLDQL AADLADRWPG LTTEVRQVAG GPGATLVEES RRAELVVVGS RGHGGFAGLL
LGSVGSQVTA HAQSPVLVVR PTEGPIAVGG PVLVGVDGSE LAEVAVGQAA DEATRQQTEL
VLVHVHPPGA TDAAEVLDTA AAAVRGSHPG LTVTTRQLRA EKPDQALIDA SRDAALMVVG
SRGRGGFTGM LLGSVSQSLV QHAHCPVLVA HPYGRAR
|
|---|
| |