| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1870 |
|---|
| Symbol | |
|---|
| ID | 5058329 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 2138419 |
|---|
| End bp | 2139948 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640474140 |
|---|
| Product | Fmu (Sun) domain-containing protein |
|---|
| Protein accession | YP_001158710 |
|---|
| Protein GI | 145594413 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases
[COG0781] Transcription termination factor |
|---|
| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.636637 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGGCC CGGTAGATGG CCAGGACGTT GACCGGCCCG GTGGTTTCCG GGCCGGTCGT
CCCGCCGCCG GTCGCGGTGG TTCCGGCGCC GGTCCCGAGC GTCGCCCGGA GCGGCGGGGT
CGTGGCGGCC CGCGGCCAGC GGCGGGCGGG CGCGGCCGCC CCACCGGCCG GAGCGCCGTT
GACCTACCCC GGCACGCCGC GTACCAAGCG GTCGCCGCGG TCCACCGGGA CGACGCGTAC
GCCAACCTGG TGCTCCCGGC GATCCTGCGT GACGCGGGTC TGGTCGGCCG GGACGCCGCC
TTCGCCACCG AGCTGACGTA CGGGACGCTG CGACGGCTCG GAACCCTCGA CGCGATCCTC
ACCGATGCCG CTGGGCGAGA CGTTGCCCGC ATCGACCCGC CGGTTCGGGA CGCGTTGCGG
CTCGGCGCGT ACCAACTGCT CCACACCCGG GTGCCCGCCC ACGCTGCTGT CTCGGCAACG
GTTGACCTGG TTCGATCGGT TGGGCCGGGG GCGACCGGGT TCGCCAACGC GGTGCTCCGA
GAGGTCGCCT CCCGGGATGT CGACGCCTGG GTGGCCCGGC TCGCCCCACC GCTGGAGACT
GACCCGATCG GGCATCTGGC GCTCGCGTAC AGCCATCCGC AGTGGATCGT GCGGGCGTTC
GCCGAGGCGC TCGGCGGTGA CCTCGGTGAG ACCACCCGGT TGCTCATCGA GGACAACGAG
CGTCCGCCGG TGCATCTCTG CGCCCGCCCG GGACGGGCCG ATCCGGTGGC CCTGGCCGAC
GAGGTCGGTG GTGCCCCGGG TGCCTTCTCC CCGTACGCGG TGTACTCCGG TGGGGGCGCC
CCCGGCGACC TGCCGGCGCT CACCGAGGGG CGGGCCCACG TCCAGGACGA GGGTTCCCAA
CTGGTGGCCG ACGCTCTTAC GGTGGCGCCA CTGGACGGCC CGGACGGTCG CTGGCTCGAC
CTGTGCGCCG GGCCGGGCGG TAAGTCCGGC CTGCTCGGTG CGGTCGCTGC CCAGCGTGGC
GCGCGTCTGA CCGCCGTGGA GGTGTCCGAG CACCGTGCCC GTCTTGTCGG GCAGGCTACC
CGCGACCTGC CGGTGACCGT GCTCAACACT GATGGTCGCA CCGTCGGGGA GACGCCGAAG
CTCGCGGAGG GGCACTTTGA TCGGGCGTTG GTTGACGCGC CCTGTACCGG TCTGGGCTCG
CTGCGTCGGC GGCCCGAGTC GCGGTGGCGT CGGCAGCCGT CGGACCTGCC GGCGCTGACC
CGGTTGCAGC GGGAGCTGCT CAGCGCGGGG CTACGGGCGG TCCGCCCGGG GGGCCTGGTT
GGATACGTGA CCTGTTCGCC GCACGTCGTC GAGACGCACG TGACGGTTAC CGAGGCAGCT
CGCCGCGCGG GGGTGCCGGT TGACTTCGTT GACGCCCGTC CGCTGCTGCC GAAGGGAATG
CCGGGGCTCG GTGACGGGCC GACGGTGCAG CTGTGGCCGC ACCGGCACGG CACCGACGCC
ATGTTCCTCG CGGTGCTGCG CCGTGGCTGA
|
|---|
| Protein sequence | MTGPVDGQDV DRPGGFRAGR PAAGRGGSGA GPERRPERRG RGGPRPAAGG RGRPTGRSAV
DLPRHAAYQA VAAVHRDDAY ANLVLPAILR DAGLVGRDAA FATELTYGTL RRLGTLDAIL
TDAAGRDVAR IDPPVRDALR LGAYQLLHTR VPAHAAVSAT VDLVRSVGPG ATGFANAVLR
EVASRDVDAW VARLAPPLET DPIGHLALAY SHPQWIVRAF AEALGGDLGE TTRLLIEDNE
RPPVHLCARP GRADPVALAD EVGGAPGAFS PYAVYSGGGA PGDLPALTEG RAHVQDEGSQ
LVADALTVAP LDGPDGRWLD LCAGPGGKSG LLGAVAAQRG ARLTAVEVSE HRARLVGQAT
RDLPVTVLNT DGRTVGETPK LAEGHFDRAL VDAPCTGLGS LRRRPESRWR RQPSDLPALT
RLQRELLSAG LRAVRPGGLV GYVTCSPHVV ETHVTVTEAA RRAGVPVDFV DARPLLPKGM
PGLGDGPTVQ LWPHRHGTDA MFLAVLRRG
|
|---|
| |