| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1764 |
|---|
| Symbol | |
|---|
| ID | 5058223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 2019730 |
|---|
| End bp | 2021235 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 640474035 |
|---|
| Product | cytidyltransferase-like protein |
|---|
| Protein accession | YP_001158605 |
|---|
| Protein GI | 145594308 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2870] ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase |
|---|
| TIGRFAM ID | [TIGR00125] cytidyltransferase-related domain
[TIGR02199] rfaE bifunctional protein, domain II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.479216 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGGGGAC CTCTGGTGGT GGTCGGCGAC ACCCTGCTCG ACCGGGACGT GGAGGGGGCG
GTGAACCGGC TCTGCCCGGA CTCGCCGGTG CCGGTGCTCG ACGAGACCTC GTCCACCGAC
CGGCCCGGCG GTGCCGGCCT GGCCGCGATG TTCGCGGCGG CTGCGCCGGA TACCGAGGTC
GTCCTGGTGA CCGCCCTGGC CGACGATGCC GGCGCCGCGC GGCTCAGCTC GCTTCTCGCC
GCGGCCGGAG TGCAGGTGTA TGCCCTCGGG CTGGCCGGTG GGACTCCGGA GAAGGTCCGA
CTGCGGTCGC AGGGCCGGGT CCTGCTGCGC CATGACCGCG GTGGTGCTGT CGGTGAGCCC
GGCCCTCCGG CTGAGGCGGT GCTGCGGGTC ATCGCCGGGG CCGCCACGGT GCTGGTCAGT
GACTATGGCC GCGGAGTCGC CGGGCAGCCC GCACTGCGGG CGGCGCTGGC CGGCACCCGG
GCGCCGGTGG TCTGGGATCC GCATCCCCGG GGGCCGGCCG CGCTGCCCGG GGTGCACCTG
GCCACGCCCA ACGAGTCCGA GGTGCGGGAA CTGGCGAAGG TGCCGCCGGG CGAGACTCGG
CTGGTGACTG CGTCGCGGGG GGCGCTGGAG TTGCGTCAGC GGTGGCGGGC CCGGGCCGTC
GCGGTGACGA TGGGCGGCGA TGGCGCGCTC CTCTGCCACG CCGGGACGAC GCCGCTGATC
GTGCCCGCGG TTTCCACAGC GGACGGTGAT ACCTGCGGTG CGGGGGATCG CTTCGCCGCC
ACCGCCGCCA TCGCCCTGGC ACAGGGTGCG TTGGTCTCCG AGGCGGTGCA GGAGGCGGTT
GCCGAAGCGT GCGCGTACGT GGCGGGCGGG GGAGTGGCGA GCATGCTGCC GCCACCGGTT
GGGCCGTTGC CATCAGTGGT GCCGGGCGTC CCGGCCGAGC GGGTCGGCGT GGCGGCTGCC
GCCACGGTGG TCTCCGAGGT CCGCGCCGCC GGCGGCACCG TCGTCGCGAC CGGCGGCTGC
TTTGACCTGC TGCACGCGGG GCACGTGGCG ACCCTGCAGG CCGCCCGTCA ACTCGGCGAC
TGCCTGGTGG TCTGCCTCAA CTCCGATGCC AGCGTCGCAG CGTTGAAGGG TCCGGACCGG
CCGGTGATGC CGCAGGGCGA CCGGAGCCGC CTACTTGCCG CGTTGAGCTG CGTCGATGCG
GTCATGGTCT TCGACGATCC GACTCCGCAG GCGGCCCTGA CCTGGCTGCG GCCCGACATC
TGGGTCAAGG GGGGTGACTA TGCCACCGGC GGTGGAGAGT CGGTGCTGCC GGAGGCGGAC
CTGGTGCGGC GGTGGGGCGG GCACACCGTG GTGGTGCCGT ACCTGGACGG GCGCTCGACC
ACCGAGATGA TCGCCGCAGC GCACCAGCGG GGTCGCGCCA GCACATCGGC GTCAACCGCA
GTGCTGCGGC CAGACCCGCC AGCTGGGGTG GCGACCCGGC CGCACCGGTC GGCGGGGATC
CGATGA
|
|---|
| Protein sequence | MRGPLVVVGD TLLDRDVEGA VNRLCPDSPV PVLDETSSTD RPGGAGLAAM FAAAAPDTEV
VLVTALADDA GAARLSSLLA AAGVQVYALG LAGGTPEKVR LRSQGRVLLR HDRGGAVGEP
GPPAEAVLRV IAGAATVLVS DYGRGVAGQP ALRAALAGTR APVVWDPHPR GPAALPGVHL
ATPNESEVRE LAKVPPGETR LVTASRGALE LRQRWRARAV AVTMGGDGAL LCHAGTTPLI
VPAVSTADGD TCGAGDRFAA TAAIALAQGA LVSEAVQEAV AEACAYVAGG GVASMLPPPV
GPLPSVVPGV PAERVGVAAA ATVVSEVRAA GGTVVATGGC FDLLHAGHVA TLQAARQLGD
CLVVCLNSDA SVAALKGPDR PVMPQGDRSR LLAALSCVDA VMVFDDPTPQ AALTWLRPDI
WVKGGDYATG GGESVLPEAD LVRRWGGHTV VVPYLDGRST TEMIAAAHQR GRASTSASTA
VLRPDPPAGV ATRPHRSAGI R
|
|---|
| |