Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_1712 |
Symbol | |
ID | 5058171 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 1961502 |
End bp | 1965521 |
Gene Length | 4020 bp |
Protein Length | 1339 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640473984 |
Product | ATP-dependent helicase HrpA |
Protein accession | YP_001158554 |
Protein GI | 145594257 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGAACG AAGTCGCCTC CACCCCGCCC GACGCCACCC GCGAGCTGCA CCGCCGGCTA CGCCCGTTGA TGCTCCGTGA CCAGCACCGT CTTCGACGGC GGCTGGACGG CGCACGCCGG ATACCCGACC CGCAACGTCG GGAAACAGCC CTGGCCGAAA TCACGACGGA TGTGGTCCGG GCCGAGGCAC GGCTGGCGGT CCGGCAGGCC GCCGTACCCG CGATCACCTA CCCGGCCATG CTGCCGGTCA GCGACCGCCG GGACGAGATC GCCGCGGCGA TCCGTGACCA CCAGGTCGTG ATCGTCGCTG GCGAGACCGG CTCCGGCAAG ACCACCCAGC TGCCCAAGAT CTGCCTGGAG CTGGGCCGCG GCGTCCACGG GTTGATCGGG CACACCCAGC CGCGCCGGCT CGCCGCCCGA ACAGTCGCCG ACCGAATCGC CGAAGAACTC GGCACCGAAC TGGGCGAGGT GGTCGGCTAC CAGGTGCGCT TCGCCGACCA GGTCAGCGAC CGGAGCCTGG TCAAGTTGAT GACCGACGGC ATCCTGCTCG CCGAGTTACA GCACGACCGG ATGCTGCGCC AGTACGACAC GATCATCGTT GACGAGGCGC ACGAGCGAAG CCTCAACATC GACTTCATCC TCGGCTACCT ACGGCAGCTC CTCCCCCGCC GGCGGGACCT CAAGGTGATC ATCACCTCGG CCACCATCGA GACCGACCGG TTCGCGCGAC ACTTCGCCGA CGCCGACGGC AACCCGGCGC CGGTCGTCGA GGTATCCGGC CGGACCTACC CGGTCGAGGT ACGGTACCGG CCGCTGGTCG AGGTGGGCGA GGACGAGGAC GACACCGACG AGGAGCAGGT TCGCGACCAG GTCCAGGCCA TCGGGGACGC GGTGCAGGAA CTGGCCACCG AAGGCCCCGG CGACATCTTG GTCTTCCTCT CCGGTGAACG GGAGATCCGA GACACCGCCG ACGCGCTCGG CAAGCTCGTC GCGCACCGAC CGACGCTGCG CAACACCGAG ATCCTGCCGC TGTACGCCCG CCTGAGCACC GCCGAGCAGC ACCGCGTCTT CGCCCCGCAC ACCGGTCGGC GGGTGGTGCT GGCCACCAAC GTCGCGGAGA CATCGCTCAC CGTGCCCGGC ATCCGATACG TGGTGGACCC CGGCACGGCG CGCATCTCCC GCTACTCGAA CCGGCTCAAG GTGCAACGGC TGCCCATCGA GCCGGTCTCG CAGGCCTCGG CCAACCAGCG CACGGGACGA TGTGGGCGCA CCTCGGACGG CATCTGCATC CGCCTCTACG ACGAGCCGGA CTTCCAGTCC CGGCCCGAGT TCACCGACCC GGAGATCCTG CGCACCAACC TCGCGTCGGT CATCCTCCAG ATGACCGCGA TCGGACTCGG CGATATCGCC GCGTTCCCCT TCATCGACCC ACCGGACCGT CGCACCATCA CCGACGGCGT CAACCTGCTG CACGAGCTGG GCGCGCTGAA CCCAACCGAG ACCGACCCGG CGAAACGGCT CACCCCGCTC GGACGACGGC TCGCCCAGCT GCCGGTCGAC CCCCGGCTGG CCCGGATGGT GCTCGAGGGT GAACGCAACG GCTGCGCCAC CGAGGTGGTC GTGATCGCGG CGGCGCTGTC GATCCAGGAC CCCCGCGAAC GGCCGGTCGA CAAGCAGGCC CAGGCCGACC AGGCGCATGC GCGCTTCGCC GACCAGGAGT CGGACTTCGT GGCGTACCTG AACCTGTGGC GCCACCTGCG CGAGCAGCAG CGGGCCCGGT CGTCCAGTGG ATTCCGGCGG ATGTGCCGAT CGGAGTACCT GAACTACCTG CGGGTGCGGG AGTGGCAGGA CATCGTGAGC CAGCTCCGGC AGGCGCTGCG GACCCCGGAG CGGAGCCGGC GGCGGGGCGG GCCGGCCACC GACGGCGGTG AGCGACGCGG CGGCGGGGCG GACCTGCCGG AGGAGATCGA TACCCCGAAG GTGCACCAGT CCCTGCTGGC CGGCCTCCTC TCCCACGTCG GCCTGAAGGA CACCCAGCGG CACGAATACC TGGGCGCGCG GGGGGCGAAG TTCGCCCTCT TCCCCGGCTC CGCCCTGGCA AAAAAGCCAC CGCGCTGGGT GATGGCTGCC GAGTTGGTGG AGACCACTCG GCTGTGGGGC CGGGTGAACG GTCGGGTCGA GCCGGAGTGG GTCGAGCCCC TCGCCCAGCA CCTGGTGAAA CGCAGCTACA GCGAGCCGCA CTGGGAGAAG CGGCAGGCGG CGGTCATGGC CGTCGAGAAG GTGACGCTGT ACGGCGTCCC GATCGTCAGC TCCCGCAAGG TCAATTTCGG CCGGATCGAT CCGGTGGTCA GCCGTGAGCT GTTCATCCGA CATGCGCTGG TCGAGGGGGA CTGGCAGACC CACCACCAGT TCTGGCGGGA CAACCAGCAG CTACTCGACG AGGTGACCGA GTTGGAGAAC CGGGTCCGAC GGCGGGACAT CCTGGTCGAC GACGAGACGA TCTTCCAGTT CTACGACGAA CGAGTCCCGG CCGAGGTGGT CTCCGGTCGG CACTTCGACG CCTGGTGGAA GCGGGAGCGC CGGCAGCGAC CGGACCTGCT GACCTTCACC CGGGACCTGC TGGTCAACGC CGGTCGCGGA GGCGTGGACG AGGTCGGCTA CCCCGACGAG TGGCGAGCCG ACGGGGTGCG CCTGCCGCTG ACGTACCGCT TCGACCCCGG CACGCCCGCC GACGGTGTCA CGGTGGACAT CCCGCTGCCG CTGCTCAACC AGGTGCCGGC GGAGAGCTTC CAGTGGCAGG TGCCGGGACT CCGCGAGGAG TTGGTCATCG CGCTGATCCG CTCGCTGCCC AAGGCGGTCC GACGAAACTT CGTCCCGGTG CCCGACTACG CCCGGGCCGT ACTCGCCGAG CTACCCCCCG GCGAGGAGGA CCTGCTGGAC GCCCTCACCC GGCAGCTACG CCGGATGACC GGCGTCACCG TCCCCCGGGA CGCCTGGGAT CTTGGCAAGC TACCGCCGCA CCTGCGGGTC ACCTTCCGGG TACTCGGCGA GGACGACCGC CCGGTCGCCG AGAGCAAGGA CCTGCCGGCG CTACAACGCG AGCTCACCGC GGAGGTACGT CAGGTGGTGG CCGCCGCCGC GCCGGACGTG ACCCGCAGCG GGCTGACCGA CTGGGAGATC GGTGCCCTGC CCCGCACGGT CGAGCAGGTC CGGGCCGGGT ACGCGGTCAC CGCCTACCCG GCGCTGGTGG ACGAGGGCGC CACGGTCGGG GTACGGGTCT TCGACTCCCC CGCCGAGCAG GAAGCCGCGC ACTGGGCAGG GACCCGACGC CTGCTCCGGT TGACCGCGCC GTCCCCGGCG AAGTTTCTCC AGGGGCGGCT CTCCAACGAG GCGAAGCTGG CGCTCAGCCG CAATCCGCAC GGGGGCGTAC CGGCACTGAT CGAGGACGCG GCCGGCGCGG CGCTCGACAA GCTGATCGCC GACGCCGGAG GCCCGGCCTG GGACGCCGAT GGTTATGCCG CGCTGCGCAG TACGGTCCGC ACCGGCCTGG TGGAGACCGT CGTCGAGGTG ATGGAGCGGG TCCGCGGGGT ACTCGCCGCC GGGTACGCGA TCGAGCAACG CCTCGGCGCG ACCCGCAACC TGGCGGTGGT GGCCGCACTC GCCGATGTCC GCAGCCAGCT CACCGGCCTG ATCCACCCGG GCTTCATCAC CGAGGCCGGC TACCCACGCC TACCCGATCT ACGGCGCTAC CTGACCGCGA TCGAACGTCG GTTGGACCGG CTACCCGGCA ACCCGGCCCG GGACAAGCAG CAGCAGGACC GGATCGCCGT CGTGCAGCGG GAGTACGCGG ACCTCCTCGC CGCCCTGCCG CCGGCGAAGC GGCGGACGGT GGCCGTCCGC CAGATCCGGT GGATGATCGA GGAGCTGCGG GTGAACGTCT TCGCCCAGGC GCTGGGCACC CCGTACCCGG TCAGCGAGCA ACGCATCTAC CGCGCAATGG ACAACGCCGA GGCCCACTGA
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Protein sequence | MQNEVASTPP DATRELHRRL RPLMLRDQHR LRRRLDGARR IPDPQRRETA LAEITTDVVR AEARLAVRQA AVPAITYPAM LPVSDRRDEI AAAIRDHQVV IVAGETGSGK TTQLPKICLE LGRGVHGLIG HTQPRRLAAR TVADRIAEEL GTELGEVVGY QVRFADQVSD RSLVKLMTDG ILLAELQHDR MLRQYDTIIV DEAHERSLNI DFILGYLRQL LPRRRDLKVI ITSATIETDR FARHFADADG NPAPVVEVSG RTYPVEVRYR PLVEVGEDED DTDEEQVRDQ VQAIGDAVQE LATEGPGDIL VFLSGEREIR DTADALGKLV AHRPTLRNTE ILPLYARLST AEQHRVFAPH TGRRVVLATN VAETSLTVPG IRYVVDPGTA RISRYSNRLK VQRLPIEPVS QASANQRTGR CGRTSDGICI RLYDEPDFQS RPEFTDPEIL RTNLASVILQ MTAIGLGDIA AFPFIDPPDR RTITDGVNLL HELGALNPTE TDPAKRLTPL GRRLAQLPVD PRLARMVLEG ERNGCATEVV VIAAALSIQD PRERPVDKQA QADQAHARFA DQESDFVAYL NLWRHLREQQ RARSSSGFRR MCRSEYLNYL RVREWQDIVS QLRQALRTPE RSRRRGGPAT DGGERRGGGA DLPEEIDTPK VHQSLLAGLL SHVGLKDTQR HEYLGARGAK FALFPGSALA KKPPRWVMAA ELVETTRLWG RVNGRVEPEW VEPLAQHLVK RSYSEPHWEK RQAAVMAVEK VTLYGVPIVS SRKVNFGRID PVVSRELFIR HALVEGDWQT HHQFWRDNQQ LLDEVTELEN RVRRRDILVD DETIFQFYDE RVPAEVVSGR HFDAWWKRER RQRPDLLTFT RDLLVNAGRG GVDEVGYPDE WRADGVRLPL TYRFDPGTPA DGVTVDIPLP LLNQVPAESF QWQVPGLREE LVIALIRSLP KAVRRNFVPV PDYARAVLAE LPPGEEDLLD ALTRQLRRMT GVTVPRDAWD LGKLPPHLRV TFRVLGEDDR PVAESKDLPA LQRELTAEVR QVVAAAAPDV TRSGLTDWEI GALPRTVEQV RAGYAVTAYP ALVDEGATVG VRVFDSPAEQ EAAHWAGTRR LLRLTAPSPA KFLQGRLSNE AKLALSRNPH GGVPALIEDA AGAALDKLIA DAGGPAWDAD GYAALRSTVR TGLVETVVEV MERVRGVLAA GYAIEQRLGA TRNLAVVAAL ADVRSQLTGL IHPGFITEAG YPRLPDLRRY LTAIERRLDR LPGNPARDKQ QQDRIAVVQR EYADLLAALP PAKRRTVAVR QIRWMIEELR VNVFAQALGT PYPVSEQRIY RAMDNAEAH
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