Gene Strop_1620 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_1620 
Symbol 
ID5058079 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp1841135 
End bp1842382 
Gene Length1248 bp 
Protein Length415 aa 
Translation table11 
GC content65% 
IMG OID640473893 
Productpolymorphic membrane protein 
Protein accessionYP_001158463 
Protein GI145594166 
COG category 
COG ID 
TIGRFAM ID[TIGR01376] Chlamydial polymorphic outer membrane protein repeat 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.890418 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGGCC TGGCGTTCAC CACTGCCGCT GTGGCCACTG CCGCTTATGC CCAACCGAAC 
CAGCCCGCAC CGAGCTTCAC CACCGCGACC GACACGGACC TCCGCGACCG GGCAACCGAG
AGCGGCCGGA ACGGAGGCGG CACTCCCGTC GCGTGTGACG CGGATGCCCT GATTGCCGCG
ATCACGTCCG CCAACGCCAC CGGCGGCGGT GTGTTCGACC TGGCCAAGGA CTGCACCTAC
CTGCTTACTT TCGATATTGG TGGGGCCGGT CTGCCCGCGG TCACCGCCCC GATCACGCTT
AATGGCGGTA AGAACACCAC CATCGAACGC GCCGCCGCCG CAGACCAGTT CCGCATCCTC
ACCGTCGGCA CCGGCGGCAA CCTCACCCTC AACCATCTGA AGATCACCGG TGGCCAGACC
ACCGCGGCGG GTACCGACGG GGGCGGCATC CTCGTCAACA CGGGCGGCGG GCTGGCGGTC
AACCACAGCG CTGTCACGAG CAACATCGCC GGCGGCAATG GTGGCGGTAT CGCCAACAAC
GGCGTCACCA CCGTCAAGCG CTCCACCGTC AGCCGCAACA CCGCCCGACT GGAAGGGGGC
GGCATCTACA GCACGGGCGC GCTGACCGTC GGCCGGTCTG AGGTGGAGGC GAACACCGGT
ACCGCCGGAG GAGGTGGCAT CGCGAGCATG GGAGGAACGG TCGAGGTCGC CAAGAGTTCC
CTCTCCGGCA ACTGGTCCAA TCAGGGGGCC GGTCTCTTCA TCGTGGATAG CGGAATCGGC
TCGGTTACCG ACACCCATAT CACGAAGAAT TCCGCTGCCG ATGTTGGTGG GGGTGTCTTC
ATTCTGGGGC AGCTGACGAT GCAGAAGGTT GTCCTTGCCG GCAACACCGC CGAAACCGGT
GCCGGCCTCA GTGTCGTCAA CGGCTCCACG GCCGACATCA TGGACAGCGC CATCGTCGAC
AACACTGCCG GTGCACAGGG CGGCGGCATC TTTAACGCTG GTATGACCAC GCTGAACAAC
ACCAAGCTCG ACGGTAACCA GGCCGACATG GGCGGTGGTG TCCAGAACCT CGCAGCAGCG
ACGCTGACCT TCTTCGCCTC GACGGTCACC GACAATCTCG CCGTGACCGA CGGCGGGGGA
ATTTTCAACG AGGTAGGCGG GACCGTCACC CTGAATACGG CTACCGGCAC CACCGTTATC
GGTAACCGTC CGAACAACTG TGTGAATGTT CCCGGCTGCG CCGGGTAG
 
Protein sequence
MTGLAFTTAA VATAAYAQPN QPAPSFTTAT DTDLRDRATE SGRNGGGTPV ACDADALIAA 
ITSANATGGG VFDLAKDCTY LLTFDIGGAG LPAVTAPITL NGGKNTTIER AAAADQFRIL
TVGTGGNLTL NHLKITGGQT TAAGTDGGGI LVNTGGGLAV NHSAVTSNIA GGNGGGIANN
GVTTVKRSTV SRNTARLEGG GIYSTGALTV GRSEVEANTG TAGGGGIASM GGTVEVAKSS
LSGNWSNQGA GLFIVDSGIG SVTDTHITKN SAADVGGGVF ILGQLTMQKV VLAGNTAETG
AGLSVVNGST ADIMDSAIVD NTAGAQGGGI FNAGMTTLNN TKLDGNQADM GGGVQNLAAA
TLTFFASTVT DNLAVTDGGG IFNEVGGTVT LNTATGTTVI GNRPNNCVNV PGCAG