Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_1475 |
Symbol | |
ID | 5057928 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 1684802 |
End bp | 1686430 |
Gene Length | 1629 bp |
Protein Length | 542 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640473743 |
Product | RNA polymerase sigma factor |
Protein accession | YP_001158319 |
Protein GI | 145594022 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.446552 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.895772 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACAGAAC CCCGCCAGAC CGGCGCCGAC GTTCGCTCGC TCACCGACAC CTTGATCGCA CACGCGCAGA GCGCCGGCGG TCAGCTCACG TCGGCACAGC TCGCGCGCAC TGTCGAGTCA GCCGAGGTGA CTCCGGCCCA GGCCAAGAAG ATCCTCCGGG CGCTCTCGGA GGCGGGGGTG ACCGTCGTGG TCGACGGTTC AGCCAGCACC GCCCCACGCC GACGGGTCGC CGCCGCCCGG TCGACCACCC CGGCATCCCG GGCCACCACC GCCAAGACCA CCAAGAAGGC CGCCACGCCT GCGTCGAAGG CGGCACCGAC CGGGGCCGAG GCACCGGCCC CAGCGCCACG GAAGGCCACC GCCCGCAAGG CGGCCGGTGC TGCCGCCGAC GGCGCCAAGG CCACTCCGGC GAAGAAGGCC ACCCGGGCGA CCAAGGCGAC CGTGGCCGCA GCGACCGGGC CGGCGAAGGC CACGACGAAG ACTGCGAAGG CCACGAAAGC CACGAAGGCC ACCAAGAGCG GGGCTGCTGG CGAGGTCGAC GCGGAGGAGT TGGCCGCCGA GATCGAGGAT GTGGTGGTCG ACGAGCCGGC GGAGCTGACC CGGGCCGCCG AGGCTGACGC GGCGAGCTCC GCCAGCGACA ACGACTTCGA GTGGGACGAC GAGGAGTCCG AGGCCCTCAA GCAGGCACGC CGAGACGCGG AGCTGACCGC GTCCGCCGAC TCCGTCCGGG CGTACCTGAA GCAGATCGGC AAGGTCCCGC TACTCAACGC CGAGCAGGAG GTCGAGCTCG CCAAGCGGAT CGAGGCCGGC CTCTACGCCA CCGAGCAGCT GCGCGCGGCG GAGGAGGGCG ACGAGAAGTT CAACCGCGAC ATGCAACGCG ACATGATGTG GATCTCGCGG GACGGAGAGC GGGCAAAGAA CCATCTCCTG GAAGCGAACC TCCGCCTGGT GGTGTCGCTC GCCAAGCGTT ACACCGGCCG TGGGATGGCC TTCCTCGACC TGATCCAGGA GGGCAACCTC GGCCTGATCC GCGCGGTCGA GAAGTTCGAC TACACCAAGG GCTACAAGTT CTCCACCTAC GCCACCTGGT GGATCCGCCA GGCCATCACC CGCGCCATGG CCGACCAGGC CCGCACCATC CGCATCCCGG TACACATGGT CGAGGTGATC AACAAGCTCG GCCGGATCCA GCGCGAGCTA CTCCAGGACC TGGGCCGCGA GCCCACCCCG GAGGAGCTCG CAAAAGAGAT GGATATCACA CCGGAGAAGG TGCTGGAGAT CCAGCAGTAC GCCCGGGAGC CGATCTCGCT CGACCAGACC ATCGGCGACG AGGGCGACAG CCAGCTCGGT GACTTCATTG AGGACTCCGA GGCCGTGGTC GCGGTCGACG CGGTGTCGTT CTCGCTCCTC CAGGATCAGC TCCAGCAGGT GCTACAGACG CTGTCCGAGC GCGAGGCCGG CGTGGTCCGC CTCCGGTTCG GCCTGACCGA TGGTCAGCCG CGCACGCTGG ACGAGATCGG CCAGGTCTAC GGGGTGACCC GGGAGCGCAT CCGACAGATC GAGTCCAAGA CGATGTCCAA GCTGCGCCAC CCGTCCCGGT CGCAGGTCCT CCGGGACTAC CTGGACTAA
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Protein sequence | MTEPRQTGAD VRSLTDTLIA HAQSAGGQLT SAQLARTVES AEVTPAQAKK ILRALSEAGV TVVVDGSAST APRRRVAAAR STTPASRATT AKTTKKAATP ASKAAPTGAE APAPAPRKAT ARKAAGAAAD GAKATPAKKA TRATKATVAA ATGPAKATTK TAKATKATKA TKSGAAGEVD AEELAAEIED VVVDEPAELT RAAEADAASS ASDNDFEWDD EESEALKQAR RDAELTASAD SVRAYLKQIG KVPLLNAEQE VELAKRIEAG LYATEQLRAA EEGDEKFNRD MQRDMMWISR DGERAKNHLL EANLRLVVSL AKRYTGRGMA FLDLIQEGNL GLIRAVEKFD YTKGYKFSTY ATWWIRQAIT RAMADQARTI RIPVHMVEVI NKLGRIQREL LQDLGREPTP EELAKEMDIT PEKVLEIQQY AREPISLDQT IGDEGDSQLG DFIEDSEAVV AVDAVSFSLL QDQLQQVLQT LSEREAGVVR LRFGLTDGQP RTLDEIGQVY GVTRERIRQI ESKTMSKLRH PSRSQVLRDY LD
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