| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1413 |
|---|
| Symbol | |
|---|
| ID | 5057866 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 1590094 |
|---|
| End bp | 1591533 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640473682 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001158258 |
|---|
| Protein GI | 145593961 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.118786 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGGT CAGACGCCCC GGCCGAGGCC GGGCACACCC GACGGTGGCG GATCATCACC
GTCGCGGCAG CCATCTCCTT CATGAGCTTC TTCGATCTGA GTGTCATCAA CGTGATGCTG
CCCTCGATCG AACGCACGCT CAGCGCCGGC AACGGCGCTG TCCAGTGGGT CGTCTCGGGC
TACTCGCTGA TGTTCGCGCT CGCTCTCGTC CCCGCCGGTC GACTCGGCGA CGCCAAGGGG
CGACGGCACG CACTGCTCCT CGGCCTCGCG TTGTTCGTCG CTGCCAGCAC GATGGCCGGA
ACGGCTGGCT CCGGCACCAT GCTGGTCGTC GCCCGGCTCA TGCAGGGCGC CGCGGCCGGT
GTCCTCGTTC CGCAGATCAC CGCCCTGGTC GAGGAGTTGT TCCAGCCCGA GCAGCGGGGC
CGCCCGTTCG GGGTTCTCGG CGCCACGGCC AGTGTCGCCA CCGCCGTCGG GCCGGTGATC
GGCGGGCTGA TCCTTGCTCT CGGTGGAGTG GAGAACGGCT GGCGGCTGGT CTTTCTCAGC
AACATCCCGA TCGGAGTCGT CGCGGCGCTA CTCGTCTGGC GGCGGTTTCC GGCGAAGCCG
CCGAGCGGCC GGACAGATCA CCGACCCGAC CTGACCGGCA CGCTGCTGCT GGGCGCCGGA
ATCATGCTGG TGATCCTGCC CGTGCTGCAG CGGGAGCAGT GGAAAGGGCT ACTGCCGTGG
CTGTTGGTGC CGATCGGATT CGGCGTCCTC GTCGCCTTCC GATCCTGGGA GACCTCCGAT
GCGCGGCGGC ACCCGCCAGT CTTCGACTTT CGCCTGCTCA CCCATCGGAC GTACCGCCTG
GGGCTGTTGC TCGGCTTCTT CTACTACGCC GGCTTCACCT CGCTACCGCT GATCTTCAGC
CTGCACCTCC AGTACGGTCT CCACCGCGAT CCGCTGCACA CCGGTCTCAC GATCGCGCCG
TTCGCGGTGG GATCCGCGCT GGGCGCGCTG CTCGGCGGCC GACACGTCGA ACGACTCGGC
CGCCCGCTGA TCAGCATCGG GCTCGTCACC GTCATGGTGA GCCTCGCCGT GATGACCGCC
CTCACCAGCT TTGCCGGGAC CACGTTCTCC GTCGTGAACG CGTTCCCGTT ACTCCTCGCC
GGGGTCGGCA GCGGCCTCGT GATCACACCG AACAACACCC TGACCCTCTC GCAGGTGCCC
AAGCCGGACG CCGGCAGCGC CGCCGGCATG TACCGCACCA TGCGGCAGGT CGGATCCGCG
GTCGGGCTGG CGATGATCAC CGCAACCCTG CTCGGCGCGG TCGCGGCCAA CGACGGAAGC
TGGTCAACCG CCCTTCGATA CGCACTCGGC GTGGAGGTCG GCATCGTCAC CGCCGCGCTG
CTCACCAACC TCGCCGACAT CATCGGTAGT CGCCGCCAGC CATCCGCACC GGCGCCCTGA
|
|---|
| Protein sequence | MSRSDAPAEA GHTRRWRIIT VAAAISFMSF FDLSVINVML PSIERTLSAG NGAVQWVVSG
YSLMFALALV PAGRLGDAKG RRHALLLGLA LFVAASTMAG TAGSGTMLVV ARLMQGAAAG
VLVPQITALV EELFQPEQRG RPFGVLGATA SVATAVGPVI GGLILALGGV ENGWRLVFLS
NIPIGVVAAL LVWRRFPAKP PSGRTDHRPD LTGTLLLGAG IMLVILPVLQ REQWKGLLPW
LLVPIGFGVL VAFRSWETSD ARRHPPVFDF RLLTHRTYRL GLLLGFFYYA GFTSLPLIFS
LHLQYGLHRD PLHTGLTIAP FAVGSALGAL LGGRHVERLG RPLISIGLVT VMVSLAVMTA
LTSFAGTTFS VVNAFPLLLA GVGSGLVITP NNTLTLSQVP KPDAGSAAGM YRTMRQVGSA
VGLAMITATL LGAVAANDGS WSTALRYALG VEVGIVTAAL LTNLADIIGS RRQPSAPAP
|
|---|
| |