Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_1289 |
Symbol | |
ID | 5057742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 1448267 |
End bp | 1449598 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640473561 |
Product | Allergen V5/Tpx-1 family protein |
Protein accession | YP_001158137 |
Protein GI | 145593840 |
COG category | [S] Function unknown |
COG ID | [COG2340] Uncharacterized protein with SCP/PR1 domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.323784 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTACGGCT GGAACGACCC GAGGAACCCA GACGGTAGCC GTCGGCAACC CGAACCGGCG GCCGATGAAC CAGCGTGGCC GACAGACCGC CCGGAGCCAC GCTCCGCCTA CCTGTTCGGT GACGAGCCGG ATGGACCTCC TCACCGATGG GAGCCCACCG ACCGACGGGA GCAGCCCACC GACGAGTGGG ACCGACAGCA GCCGACCGCG CACTGGCGGT CGGACGCCGA GCCCGCGCGA GGCTGGGGAG CCGCGGAGCA CCCGTACCAC GGTCCCGTCG GTGACCCCTA CCACGAACAG CCCACGCAGG GCTGGGAAGC CACCCCGACC TGGCAGCACG GAGAGCCCAC CCAGAACTGG CAGCGGGAGC AGCCGGGCGA CCGGCCCGAC CAGCGGTTCG CGGGCGGACG GAACGAGCCC ACCGGTAGCT GGCACGGCGC GGCCACCCCC ACCGGCGGGC CCGAGCCCAC CGGCCAGTGG CAGGCCCCGG AGCCGACCGG CTGGTACGCC GACGAACCAA CGACCAGCAT GCCGTCCCTC GCGGAAGCCG CAGCCGCCGG TGACGTGCCC GCCGGCGAGG ATCGGCCCCG TCGTCGGCAC CGGCGACCGC TGCTCATCGG CGGAGCCGCG GCGGCAGCCA CACTGGTGGT GAGCCTCGGG GTCGGCGCCG TTACCTTCGC CGGTGGCGGT GACGCCAGCC CCACCTCGGC CATCGACGAC ATCGTGGCGA CGAACCCGAC CGAGGAGAGT GCGTTTCCCA GCGGCACGCC GACCTCGGCC AGCCCCAGCG CCACGCCGAC CACGACGTCG CCATCACCGT CACCGTCGGT CACGCCGAGT CGCAAGCCGA GCCCGACGGC CTCGCGCTCC ACCGCCGCCC CCCGGCCCAC CCCGAACCGC ACCACCGCGC CCCCCACCAA CAGCACCACC GCGCCCGCCA ACGGCAACGT CAGCGAAGAC GCGGCCGAGG TGGTTCGGCT GGCCAACATT GAGCGCAAGG AGGCCGGCTG CGCGGCGTTG AGCATCGACG ACAAGCTGAT GACCGCAGCC CAGCGGCACA GCCAGGACCA GGCCGACAAC CGGAAGATGT CACACGACGG CAGCAACGGC AGTAGCCCCG GAGACCGCAT CGACGATGTC GGCTACCAGT GGCGCACCTA CGGGGAGAAC GTCGCCTGGA ACCAGCAGTC GCCCGCCGCG GTGATGAAGG CGTGGATGAA CAGCTCCGGC CACCGGGCGA ACATCCTGAA CTGCTCCTTT ACCGAAATCG GGATCGGCAT CGCGACCAGC AACGGACCCT ACTGGACGCA GGTCTTCGCC GCGCCCCGTT GA
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Protein sequence | MYGWNDPRNP DGSRRQPEPA ADEPAWPTDR PEPRSAYLFG DEPDGPPHRW EPTDRREQPT DEWDRQQPTA HWRSDAEPAR GWGAAEHPYH GPVGDPYHEQ PTQGWEATPT WQHGEPTQNW QREQPGDRPD QRFAGGRNEP TGSWHGAATP TGGPEPTGQW QAPEPTGWYA DEPTTSMPSL AEAAAAGDVP AGEDRPRRRH RRPLLIGGAA AAATLVVSLG VGAVTFAGGG DASPTSAIDD IVATNPTEES AFPSGTPTSA SPSATPTTTS PSPSPSVTPS RKPSPTASRS TAAPRPTPNR TTAPPTNSTT APANGNVSED AAEVVRLANI ERKEAGCAAL SIDDKLMTAA QRHSQDQADN RKMSHDGSNG SSPGDRIDDV GYQWRTYGEN VAWNQQSPAA VMKAWMNSSG HRANILNCSF TEIGIGIATS NGPYWTQVFA APR
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