| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1024 |
|---|
| Symbol | |
|---|
| ID | 5057470 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 1154970 |
|---|
| End bp | 1161131 |
|---|
| Gene Length | 6162 bp |
|---|
| Protein Length | 2053 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640473293 |
|---|
| Product | beta-ketoacyl synthase |
|---|
| Protein accession | YP_001157876 |
|---|
| Protein GI | 145593579 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3321] Polyketide synthase modules and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGGTG AGCAAGCTGA GCACGGTGTC CACGCGATCA GGGAATTCCT GCTCACCTGG
CTTGTGGATC TGCTCGGTGT CCCCCGGGAT TCCGTGGATC GGTGGGCCCC CCTGCATCGG
TATGGCCTGG ACTCGCTGAA GTCGACGGCA CTCGTCGCCG CCCTGTCCGA GTTTCTCGCC
CGGCCCGTAC CGATCACGTT CCTCTGGGAT CACCCCACAC TGGAAGGCCT GTCCGTCGCA
CTGGCGCGCG GACGACGAGT CGAGGAATCC GCCGGCGGCA CGGCCACACG ACACCGGCCG
GAAGACGGTG CCCCACCCGA ACCGCTCGCA CTCGTGGGGA TCGGCTGCCG GCTACCGGGG
GCGGCGGACC CGTCGGCCTT CTGGCGCTTG CTCGTCAACA GGCACGACGC CATACGGCCG
GTCCCGCAGC GCCGGCGTGA CCTGCTCGGC AACGCGGACA TCGACGATAC GTCCTTCCGC
TGGGGCGGCT TCCTCGACGA CATCGACCTG TTCGACCCTC TCTTCTTCGG GATCTCACCG
CGCGAAGCCC GTGTGATGGA CCCGCAGCAG CGGTTGATGC TGGAGCTCGC CTGGGAGGCG
CTGGAGGATG CCGGCATAGC GCCCGGCAAC CTCGCCGGGA CCGACACCGG GGTCTTCGTG
GGCACCAGCT GGTGCGACTA CTCGGCCCTG GCGCACGAGG CGGCAGCGCA GTTCGAAATC
GGACCGCACG CGGCGACCGG AATGCACGAC AGCATCATCG CCAACCGGGT CTCATACGCC
CTCGCCCTGC AGGGCCCCAG CATGGCGATC GACACCGCGT GCTCATCCTC GCTGGTCGCG
GTCCATCTCG CGTGCCAGTC ATTGTGGTCG GGCGAGAGCG AGCTCGCCCT CGCCGGCGGC
GTCACTCTCA ATATCTTTGG GCCACACTAC CTGGCCATGA ACGAGACAGG CGCTCTCTCG
CCGGACGGCC GGTGCAAGAC CTTCGACGCC CGTGCCGACG GCACCGTACG GGGCGAAGGA
GCCGCCGTCG TCGTCGTGAC GCCCCTGCGC GTGGCGCTGG AACGCGGGCT GCCCGTCTAC
TGCCTGATCC GCGGCAGCGC CGTCAACAAC GATGGCCTGA GCAACGGGCT CACCGCCCCG
AACCCACGTG CTCAGGAGAC CCTACTACGT ACCGCGTACC GCCGGGCCGG CTTGGCACCA
TGGCTCGTGG ACTATGTGGA GTGCCACGGC ACAGGCACAC CGCTGGGTGA CCCCATCGAG
GCCAAGGCCC TCGGTACGGT GCTCGGTCGC GATCGCGAAC CAGGTAACGA GCTCCGCATC
GGTTCGGTGA AGACGAACAT CGGCCACCTG GAGCCGGCGG CCGGCGTCGC CGGTCTCGCC
AAGGTCGCCC TGGCGATGCG TAACGGCATC CTGCCCGCCA GCCTGCACTA CAGCCGCCCC
AACCCTCAGG TTCCCTTCGC CGAAGGTCAC CTGCGCGTCC AGGATGCGAC AACCACGTGG
CATCGCCGGT CAGATCTACG GCGCGCGGGA ATCAGCGCCT TTGGCTTCGG CGGGACGAAC
TGCCACCTGG TGACAGAGGA ACTGGCGCAG CCTGAGGCCG CCCTATTGCT GCTAGCGGCG
GATTCCACGC AGGAGCTCAC CAACCAGGTG GCTGCGCTGC GCTCCGCTCT CGCGGAGGAC
CGAGTCGACC TGGCTGCGGC CTGCCGGCAG GCGCTCGACA CGCTGGGCAC CGGCCGTTTC
CGGCTGTCGG CAGCCGCGCG TACCACAGCC GAGCTGCGGG CGCAGCTGGA CGCGTACGCC
GAGGGCCGGC CCCTACCCGG CCTGTCCACT GCGGAGACAG CTCTTCGTCG ACCCCGCGTC
GCGTTTCTCT GCTCCGGAAC CGGCTCCCAG TGGTTCGGCA TGTGCCGACA GCTGGTTGCT
GGCATGCCCG CGTTCCGGCG ATCGCTGGTG CGGGCGGCTG AGCGGATAGA ACGAATCCTC
GGCTTCTCAG TGCTCGACCG GCTCTTCGAC GACGAGTCGC ACGCCCGGCT CGACGACATG
GAGATCGTCC AGCCGATGCT GTTCTGCGTC CAGGTCGCCC TGGCCGACGC CTGGCGTTCG
CTCGGTGTGG AGCCCGATCT GGTAATCGGC CAGAGTGTCG GCGAAATCGC AGCCGCCCAC
CTCACGGGTG CGCTCAGCCT CGACGACGCG GCCTTGGTAG CGGCCACGCA CGCACGGCTC
GTGCAACGCC TAGCCGTGGG TCGCGGCGAT AGCCTGGTCG TCGCGGCCGT CCCCGAAGTT
GTCGCCGGGC ACCTAGCAGC GGTCGAGGAG CGACCCACGC TAGCTGGACG CCTCGGCCCG
GCCTCTACGC TGGTCTCAGG GGATACCACC GCGATCCGGG CGCTGACCGA CCGGTTCGCG
GCAGCGGACA TCGCAGCCCA CCGGGTACGC ATGGGTTACG CATCCCACTC GCCGCTGATG
GACCCCGTGC TCACACCCCT GCGGTCGGAG ATCAACGGCA TCGTCGCGCG CCCGGCTCAG
CTGCCGATGA TCTCGACGGT CACCGGGAAA GAAATCGACG GCGAATCCCT GGGCCCGGAC
TATTGGCCGG ACAACGTCCG CCAGGAGAGC CGGCTCACGG CCGCCCTGGA CACCATGGCG
GCGCACGACA TCGACGTCGT ACTGGAGCTC AGTCCGCACC CGGTCCTACT CAAGGGCGTA
CGGGCAAGCC TCGACAGCGA ACGGGAGGGC GCGACGAGGC GCCCCGTCAT GTGCCTGGCG
TCGCTTCAAC GAGGGACGGA CGAGGCGTGG AGCCTACTCG CCTCGCTGGG TGAACTGCAT
ACCGTGGGTC AACCGGTCGC CGCCGGATCC TTCCTGTGCG CACCACGCGG GCGTCATACC
GAGCCCCAGG CGGCCATCGG TTCCGCGACG GCGCGGGCCG AGGAGACGCC CCTTTCCCTG
CTGCCCGTAA CCGCCCATTC CGCTGACGCG CTACGGGACA CCTGCCGAGA GCTGTCCAAC
CATGTCGAGC GAAATGCCGC ACCATGGCTG CCGGACCTGG CGTACACCCT GGCGACCCGG
CGCACCCCAC TTCCACACCG GATCGCTTTC GTGGTGCGTG ATCGCGACGA TCTACTCGAC
GGCCTGGCGC ATATTTCCGC TGGCAGGTCG TACCCCGGCG CCGTCAAGGG CACCGTCGCT
GGCGGCGGCG CCCGGCGCGT AGCACTGGTG TTCTCCGGCG GAGGCACGCA CTGGGCCGGC
ATGGGACGTG CCTTGATGGG CTGGCACGCG GGCTTCCGGG CATCGATGCA CGAGTGCGAC
GCGGTGTTCC GGGAGCTGAT CGGATGGTCG GTAGTCGACG AGCTCAGCCT GCCGGCGGAG
CGGTCCCGGC TGGACGCGAC CGATATCCAG CAGCCGGTGC TGTTCACCCT GCAGGTCTCA
CTGGCCCGTC TCTGGATGGA GCTTGGCATC GAGCCGGAGG CATTCGTCGG ACACAGCATC
GGCGAGGTCG CCGCCGTCTG TGTGGCGGGC GGGCTGTCGG TGCGTGACGC TGCCCGGGTC
ACCATCGCCC GCTCCCACCT TATCCAGCAC CGCGCCGCGA AGGCCGCCAT GATCGCCGTC
CAAGCCGGAG ACGAAGAGAT CATCCCGTTC CTCGCCCCGT ACGGCGGGCG CGTCGCCATC
GCGGCGCTCA ATAGCCCAAC CAGCTCCGCG GTTTCCGGCC CGCCCGAGGA GATTCGCGCC
CTGGAGGTCG CACTAAATCG AGCCGGCATC TCGAGCCGAG CCGTACGCGT TGATCGCCCC
GGTCACAGCC CTGGTATGGA TCCGCTGCTG TCACCGCTGC GTGAAGCGCT CACCAACATT
GAACCTCGTG CATTTTGGGC CAGATTCCAC TCGACGGCGC TCGACGGCGC GGTCGATCCC
GTGGTCAACG CAGACTACTG GGCGCACAAC CTGCGCAACC AGGTGCGCTT CGCGCCGACG
GTGGCGGCTC TGGCCGACGC GGGCATTGAC ACGTTTGTTG AGATCAGCCC GCATGGCACC
CTACGCGGCG CGATCGAGGA GATCGCTCAG GCTCAGGGAG CCTCTGTTGT CGTGGCCGAC
TCGATCCGCC GCGGGGAAGA CGACAATCGC TGCTTCCTCA ACGCGGCTGC ATCGCTGTTC
GTACATGGCG TGCCCCTGTC GCTCGAGACG CTGTTCTCGT CCGACGCGCA GGTTGTCGAG
ACTCCGCTCG TGAGCTGGCA GAGGCACCCC TACTGGCTGG ACGCCGCGCC CGTCCGCCAA
CCACGCACGC CCGCTGCGGC ATCCGTCGCC GGCCCGACCA CCAGCTTCCA CAATGAGAAC
GCCACCACCC CGACAGCGGA AGCCACCATC ACCGGCGAGA TCGCGCACGT TCTGGGCATG
CCGGTCGAGG AGCTCGCCGA GGGCACGCGG CTGCGGGACT TCGGGCTCGA CTCCATGCTC
GCCATGCGGC TGGGCAGCAG AATCCAGACC CTGTTCGGCC ATCGTGTCTC GCTGTTTGAG
TTCTTCACGG ACCGGACGGT TGGCGAACTC ACCGCGCGCA TCGCCGAGCT CGTCGGTGCG
CGCGCGTCCA CCGGCGGCGA GGACAACGCG CCGCCGCGGC TGCGGAATAC GGCTGTTGCG
GACAATCTGT CCGACGCCGA CGCCGAGGAG TTGCTCGCGG AACTGACCGA TCGTGGGCTG
CTGGAGCCGG TTTCCCCGGA GGCGCCCGCG GCGCAACCAC GCGAAGAGCT GCGGGCGGCG
CTAGAACGCA CCCAATCCTT TGCGCTTGCG CCGGTGGCGC ACGGTCAGGC CGCCATTTGG
TTCATGCAGC AGCTGTCGCT CGACGGCGCA GCCTACAACC TCATGTTCGG CGCTCGGGTG
CCCGATAAGA TCGACGAGTC GGCCCTGCGC CGGGCCGCAG CCGCGGTGGT GGAGCGACAT
CCCGCGCTGC GCACCGTCTT CGTCGAAGCC GGCGGCCACC CCTACCAGGT GATAAAGGCG
GATCCCGGTT ACGAATTCGA CACGGTCGAC GGTACGGGGC TCGATGACGC GGCACTGACC
GACCTCCTCG CCGAGCACGG CCACCGGCCC TTCGATCTCG ATCAGGGTCC GCTATTGCGG
TTGGTGTTGG TCAACCGCGG TGCGGCAGAC AACTGCCTGC TGCTGGTCAT CCACCATGTG
GCAGCTGACG CGGCGTCGGT GGACATCGTC GTCCGGGACC TGCGCGAGTT CTACGGCGAG
GCACAGCGCG GAACGCTGCT CACCCAGGCA CCCGAGACAC CGTACACCGA GTTCGTCGAA
TGGGAACGCG AATGGCTCGG CAGCCCGGCG GCCGAGGCGG CGCTGCACTG GTGGTCGCAA
CAGTTGGCGC AGCCCCCGGC GCACCTCGAC CTTCCACGCC TGTCAGCGCC CGACGCGACC
GCCGACAAGC GACCAGCCAA AGAGCGGGAC GGTGTGGTGA GCTACGCGGG GGAGGATGCC
AGCTTCCGGT GGGACGCTGC CGATACCCGC CTACTGAAGG ACTTCGCCGT GCGCGCCGGC
GTCTCGGTCA GCACCCTTGT CATGGCAGGC TTCGTGGCCA CCCTGGGCCG GGCAACCGGG
GCGAGGGACA TCGTCCTGGG CACGGCGGTC GCCCAGCGCA GTGATGCGGG GCGCGAGTCC
GCGGTGGGGT ACTACCTCAA CACCATCCCA GTCCGCGCCC GGCCCCGTCC GGACATCACC
TTCGACGCGT TGCTGCGTGA AGTCCACGAC TTCGCGCTCG GGATGTTGGA ACACATGAAC
TATCCACTGG ACCTGCTTGT CTCGGCGCTC AAACCGCCGC GGCGGCAGGG CCGCACGCCG
TTGTTCGACA TCGCTGTCAA CTGGCTCTCC GGTGACGCGT TCACCTATGC GAACACATTG
TTCCACGGTG CTGGCGTGGC GGCGTGGCCT GCCGGCCCCC TACCACTGGT CCCGCTGCCT
CTCCGGCGGC ACATCGCAAA GTTCGATCTC GAAATCACGA TGGGCGACGT CGCCGACGAG
GTGGTCGGTC AAGTGCAGTT CAAACCCGCG TTCCTGGAAA GAGAAACCGT GACGACACTG
CTGGAGTACT TCCACCGCGT GCTGTTGCAG GCGATCGACC GGCCGGATGT GCCGCTGAGT
GACCTCGTGC TGGAGACCTC GGTGAAGCAG GCGGTCTCAT GA
|
|---|
| Protein sequence | MSGEQAEHGV HAIREFLLTW LVDLLGVPRD SVDRWAPLHR YGLDSLKSTA LVAALSEFLA
RPVPITFLWD HPTLEGLSVA LARGRRVEES AGGTATRHRP EDGAPPEPLA LVGIGCRLPG
AADPSAFWRL LVNRHDAIRP VPQRRRDLLG NADIDDTSFR WGGFLDDIDL FDPLFFGISP
REARVMDPQQ RLMLELAWEA LEDAGIAPGN LAGTDTGVFV GTSWCDYSAL AHEAAAQFEI
GPHAATGMHD SIIANRVSYA LALQGPSMAI DTACSSSLVA VHLACQSLWS GESELALAGG
VTLNIFGPHY LAMNETGALS PDGRCKTFDA RADGTVRGEG AAVVVVTPLR VALERGLPVY
CLIRGSAVNN DGLSNGLTAP NPRAQETLLR TAYRRAGLAP WLVDYVECHG TGTPLGDPIE
AKALGTVLGR DREPGNELRI GSVKTNIGHL EPAAGVAGLA KVALAMRNGI LPASLHYSRP
NPQVPFAEGH LRVQDATTTW HRRSDLRRAG ISAFGFGGTN CHLVTEELAQ PEAALLLLAA
DSTQELTNQV AALRSALAED RVDLAAACRQ ALDTLGTGRF RLSAAARTTA ELRAQLDAYA
EGRPLPGLST AETALRRPRV AFLCSGTGSQ WFGMCRQLVA GMPAFRRSLV RAAERIERIL
GFSVLDRLFD DESHARLDDM EIVQPMLFCV QVALADAWRS LGVEPDLVIG QSVGEIAAAH
LTGALSLDDA ALVAATHARL VQRLAVGRGD SLVVAAVPEV VAGHLAAVEE RPTLAGRLGP
ASTLVSGDTT AIRALTDRFA AADIAAHRVR MGYASHSPLM DPVLTPLRSE INGIVARPAQ
LPMISTVTGK EIDGESLGPD YWPDNVRQES RLTAALDTMA AHDIDVVLEL SPHPVLLKGV
RASLDSEREG ATRRPVMCLA SLQRGTDEAW SLLASLGELH TVGQPVAAGS FLCAPRGRHT
EPQAAIGSAT ARAEETPLSL LPVTAHSADA LRDTCRELSN HVERNAAPWL PDLAYTLATR
RTPLPHRIAF VVRDRDDLLD GLAHISAGRS YPGAVKGTVA GGGARRVALV FSGGGTHWAG
MGRALMGWHA GFRASMHECD AVFRELIGWS VVDELSLPAE RSRLDATDIQ QPVLFTLQVS
LARLWMELGI EPEAFVGHSI GEVAAVCVAG GLSVRDAARV TIARSHLIQH RAAKAAMIAV
QAGDEEIIPF LAPYGGRVAI AALNSPTSSA VSGPPEEIRA LEVALNRAGI SSRAVRVDRP
GHSPGMDPLL SPLREALTNI EPRAFWARFH STALDGAVDP VVNADYWAHN LRNQVRFAPT
VAALADAGID TFVEISPHGT LRGAIEEIAQ AQGASVVVAD SIRRGEDDNR CFLNAAASLF
VHGVPLSLET LFSSDAQVVE TPLVSWQRHP YWLDAAPVRQ PRTPAAASVA GPTTSFHNEN
ATTPTAEATI TGEIAHVLGM PVEELAEGTR LRDFGLDSML AMRLGSRIQT LFGHRVSLFE
FFTDRTVGEL TARIAELVGA RASTGGEDNA PPRLRNTAVA DNLSDADAEE LLAELTDRGL
LEPVSPEAPA AQPREELRAA LERTQSFALA PVAHGQAAIW FMQQLSLDGA AYNLMFGARV
PDKIDESALR RAAAAVVERH PALRTVFVEA GGHPYQVIKA DPGYEFDTVD GTGLDDAALT
DLLAEHGHRP FDLDQGPLLR LVLVNRGAAD NCLLLVIHHV AADAASVDIV VRDLREFYGE
AQRGTLLTQA PETPYTEFVE WEREWLGSPA AEAALHWWSQ QLAQPPAHLD LPRLSAPDAT
ADKRPAKERD GVVSYAGEDA SFRWDAADTR LLKDFAVRAG VSVSTLVMAG FVATLGRATG
ARDIVLGTAV AQRSDAGRES AVGYYLNTIP VRARPRPDIT FDALLREVHD FALGMLEHMN
YPLDLLVSAL KPPRRQGRTP LFDIAVNWLS GDAFTYANTL FHGAGVAAWP AGPLPLVPLP
LRRHIAKFDL EITMGDVADE VVGQVQFKPA FLERETVTTL LEYFHRVLLQ AIDRPDVPLS
DLVLETSVKQ AVS
|
|---|
| |