Gene Sterm_1780 details

Gene Information

• Locus tag: Sterm_1780
• ID: 8597249
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sebaldella termitidis ATCC 33386
• Kingdom: Bacteria
• Replicon accession: NC_013517
• Strand: +
• Start bp: 1909565
• End bp: 1915762
• Gene Length: 6198 bp
• Protein Length: 2065 aa
• Translation table: 11
• GC content: 35%
• Product: outer membrane autotransporter barrel domain protein
• Protein accession: YP_003308569
• Protein GI: 269120392

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTACGATA AAACTTTTTA TAATCCTACT CTTGGTGCAG TACAGACCTG GAATACAGGC 
TTATTTTCAA ACTACAATCT GGAAAGCGGA AATTTTTCTT ATGATGTAAA AATTGCAGGT 
TCAAACAGTA ATACTACTTT CAATTTTAAT AGTGCTGCGG GAAGCATAGA TCCTGCTGCA 
ATAGCTGATG CATCATTAAA TCAGCCGGCA GTTATTCCAA CATCAGACTC TTATTCCGCT 
AAGGTTACAT CAGTTCCGAT GATTGTCTCT ACATCAGCCC CGAATATAAG AATAGGTGAG 
AATACGACTA TAAATCTAAT ATCTTCAAAT ACTGCCAATA ATTATCAATA TGGGACTTTA 
ATGCTTCAGT ATACATTAAC TCCAAATCGT TCAGCACTTA ATACCGACAG TGATTATGCA 
TTTGGAAAAG GAAAAGCATA TCCTGATTCT CAGGCAGGTA TTCCGTTTTC CATATTAAGA 
AACAGCGGAA CTATTAATAT AACCGGGAAT TACGGAGTGG CTGGGATTAT GATGAACAAG 
AACAATCAGA GCGGATCCCG TAATGATTAT CTGCTTGTAA ATGACGGAAC AATTATAGGC 
GAGTATATTG ATTCAAACAG TAAACAGCAT ATTGGTCTGG CATTTGAAGG AAATACTACT 
CCCGGAACTA AAGGAGAAAG ATATATTTTA GGAAATGACG GGATAATGGA ATTCAGAGCG 
CCGCAATCCG CAGCTTTTAA TTTTGGAGGT GTAAACTTAT TAAAATATCA GATTGTATAT 
AACAGAAATA CTATTAATAT GTATGGTTCA AACAGTTTCG GCGTAAAGAT GGCAAATTCC 
AGTTTAAGCG GATATACTCC CGGTACTGAT CAGACAAATA CAAAAATTTT ATTGGAAGAT 
CCTATAAATA TATACGGGGA TAACAGTGTG GGAGTTTATT ATTCAGCAGC TAATATGAAG 
GCTGAAGATT CTGTGTTCAA AGTTAATATA GGAACGGGAA AAAACAATTA TTCTGGTAAT 
ATAAGCGGAA ATGATTCGAA TTATGTAGAA AATTCTGTTG GTATGTATAT CACTCCCAGA 
AATAACAATA CCACAGGAAC TATAACAAAT ATCGTAAATT ATGACATAAA ATTCGGAGAT 
TATGCTAAAA ATAGTATCAT GTTTGTAAAC GATGGTTCCA GTAATTCATA TAATATGTCG 
AGCGGAGCAT TTACTTCTCC GCTGTTAAGG GAAACTTATA TTGATAATTC TGCAGTTACA 
TCTGTTAATG TAGAAGCAGG AACAAATAAT ATAGTATTTT TTAACAAAGG AGGGGTAAAA 
AATGTCAGCT ATGCATATAT ACCAATTATT TATATAAAAC CTGATATAAA TATCGGAACA 
GCAGAAAAAG CGGTAGATAA TACACTGGCC TTGTATAATC TGGGTGCAAT AGCTCATCTT 
AACGGAAATA TCGAAACATA CGGGGAATAT TCACATGGTA TATATAATAA CGCAGCTGCT 
CTGACTTCAG GGGGAGTAGT TTATTCAGTA GGCTCGAAGC TTGATAATAT AATAGACGGA 
AATGTTAAAA CACTCTCAAT AGTTACTCAC GGAGATAATT CGGCAGTTTT ATATAATAAT 
GAATCAAATA TAGATTTTCA GGCCGGGGGC ACTTTTAAAG CTCTCGGAAA AAACGGATCA 
GTACTTTATA ATAAAAATGG AAGTATAAGC ATAACAGGCG ATTCTGTATT TGAAGCAGGA 
GATAACGGAA CTCTTATTAT GGCCGACGGA GGGAAAATAA CATTAAGCGG AAATAATATA 
TATAATGTCA GAAATAACTC TGTTTTCGCA TATGCACTGG GAAATCCGGG AATAAAGGTT 
GAGTTTTCCG GTTCAGGACA GACAGTTAAT CTGGAGAATG GAAGCATAGG GTTTGTATAT 
GACGGTGGTT CGGTAAATAT GCAGCAGAAT TCACTCTATG ATTATTTAAA TGATAATTTT 
ACAGGGTTAA ATAATTTAAA TATAAATGTA TCTGATAATT CCAGATTATT TCTGATAAAT 
AACTACGGAA CGCTTAAGTT AAGTGAATTG GAAGCTATGA ATACAGGTTC CGGATTATTT 
GGAAGTGTAA TAGGAAACAG CGGAAATTCA CTTTTAAATA AAGGAACTCT GGTGTTAGAT 
ACTTTAGGAG TGATTAATCT TGATGATCCA AATGATTTTT ATAGCAATAC AGATAAAGCT 
GCGACAGGAA TTACAGTCGA TGCAGGGGTA ACTATAAAAG GAACACAGGA CAGTCAGACA 
GCATTAAGCG GCAAGGATAT ATACAGAGGG ACATCGGGGG GAAGTACTTA TGTGGTAATG 
AACAACTACG GCAATATAGA GCTTTCGGGT GATAATTCAC TAGGGATATA TACAAATAAC 
GGACTTATTA ACAATTATTC AGAAATAAAT ACGACAGGGA AAAATTCTGC CGGTTTATTC 
GGAGAAAATA GTTCAGTTGT TAAAAATTAT GGAAATCTAA AAATATCTGA TAATGGTGTG 
GGTATATATG CGGTTTCCTA TCAGGCTCCT GACAAGCCAG ATGAAGATTT TGGCAGCGGA 
TTGGTAGATG TAACAAATAC CGGGGTAATA AGTGCAGTCA GTTCTGAAAA AGCAGTTGGT 
ATTTATGTAA ATAACAATAA AACAGGAGCA TTGAGAAATA CCGGGATTTT GAATTTATCA 
GGCGGTACAG TGGATATGTC TCTTTCTAAG GAAAGTACCG GAGTATATGC AGTAAATGCA 
ACTGTAAACG GCGGCGGAAT AATAAATGCC GGAGAATCCG GAACAGGCTT GTATGCTAAG 
AACAGTGATC TTACTCTTTC TGATCTGACA TTAAATATGA ATAAAGATAA TTCAGTAGGA 
ATATATCTTG ATTCAGACAG CAATCTTAAC ACAAGCGGGA CAAATACAGT GAATATAACA 
GGCAAAAAGA ATACAATATT TTACGTAAAT ACTGAAGGGA CATTTAATCA GAACTTTTTG 
ATTAATGGAA ATAATAATGC AGATTACACC CTTATGTATA TAAACAGCAA CAAAGGAACT 
TATAACGGAA CAGCAGTATT AAGCGGTAAT AGTACGGTAT TTTATGGAGT GAATTCTGTA 
ATTGAACTGG GGACTTCTTC ATCACTGACA GCACCCGGAG GTAATACAGC TGGAATTTAT 
GCAGACGGCT TATATGGAGG AATCACTGAC TATGAAGGAA TAAATAAAGG TGAAATGTTA 
TTCGGAGATG ATTCTGCCGG TCTTTATGGA ATAAACGGAG CAAGGCTGTT AAATACCGGC 
AATATAACAA CAGGCAGTAA ATCATTGGGA ATGAGCAGTG AAGCAAGTGA TTATCTCAGA 
AATAAAGGAA CAATAAAAAC AGGAAGTAAT TCTATAGGAA TGTCGGCTAA AAATACAGCT 
CTTACGGAAA ATTCAGGAAA TATAAATGCT GCCGGGGAAA ACATAACAGC ATTATATTCT 
GAAAACAGCG GAATATCAGT TATCAATAAT ACAGGAAATA TAGAATTAAC AGGGAAAAAT 
ACAATAGGTG TTTATTTGGA GGAAGGCGGA CAGCAGACAT TTAATAATAA TAAAGTGATA 
AAAACAGAGA ATTCTGAGAA TTCATCAATA GCCAGCACCG GGATATATAA TAACGGCCAT 
ATTGTGAATA ATACTGGTGA TATAATCGCG GGAATGAGTT CAGCGGGAAT ATATAATAAT 
AATGGAATAA TAAGACATTC AGGCAGTATA ACTTCAGAAG CAGACGGAGT AGGAATTTAT 
TCTGCAGGCG GGGAAATAAA TCTTACAGAT GGAACCATAA TAAGTAAAGG TTTTGCAATA 
TACGCAGAAA ATAATACAAA AATAACGAAT ACAGGAACAG AAGTAAATAC CGGAGATAAA 
ACTGTAGCAT ATGTATTAAA ATCAGGATCA GGACTTATAA ACGATCAAAA TGCATCAATA 
GGAACTGGAA GTATATATGT ATACGGCAAT GGTACTGAAG AGATAGTAAA TAATGCTTCT 
TCAATAATAA TGACCGGCCC GGAAAGTATG GGATATTATC TGACTAACAG TGAAGGCTTA 
ATAAATAATG CAGATATTAC AGGATTGGCA AAAGGAAATA TAGGGATTTA CAGTGATAAA 
GGAAGTATTG CAAATTCCGG AAATATAACA TTAGGGGATT CGGAAATAAT AGATGAAAAT 
GATTCTTCTA AAAACAGATA TGCAATAGGA ATATACGGAG AAGATGCAGA AGTCAATAAT 
AGCGGAAATA TAAAAACGGG CTACAAAGGA ACAGGAATAT ATACAGAAAA TAATAAACTT 
ACAAACAGCG GGAATATTAC TTCTGACGGA GAATACGCAG TTGGTTTATG GGGAAGTAAA 
GCTGTAATAG AAAATAACGG TGAAATAGTA ATGAATGGTG ATTATTCTCA GGGTATAATG 
GGAACTTCAC AGTCAAATAT AGTAAATAAC AGCATAATAA CTATGAATGG AAATAATTCA 
ATAGGAATCA GCGGAAATGA AGGAACAAAA ATACAGAATA ACGGAATAAT AAATTTATAC 
GGGAATGACA GTACAGGAAT TATGCTTTCT AACGGCTCTG TATTATTAAA TAAAGGAACA 
ATAAATTTAG GGCCGGGTTC AAATAATGCA GAGGTACAAA ATGGAAATTC TGTAATTCCG 
CCTTCTATAG TAAATGCGGG AGTAATCAAG GTAGACGGTA AATTTGAATT AAACGGAATA 
AATCTTACAA TTCAGGTTGA TCCCGAAAGT ATAAGAAAAC CGGAAATGAG TGAAATAACA 
ACAGATCAGT ATACAACAGA AGATCTGAAA GCAAAATTTC TTGTGTCAGA TGCAGTTCGG 
TTTCAGGCAG ACAGCTTTGA TTTTTCAGGA CCTGCCATGA TAGACCCGTT ATTCACACAA 
GGGACAAATG CATTGGTATA TAAATTTGAG AATGTATTTA TGGCTAAAGA TCTGGCATCA 
GCAGAATCGA TAACTGCGGA CAGTAATTCA GTTACGTTTA GAGCGACACC TTCAATGAAT 
GAAAATGGAA ATGTAGATAT CTGGATGGAG AAAATTCCTT ATCAGTATTT TACTAACGGA 
ATGTATTATG ATAAAATGGC GGAAATACTT GATAAAAATT ATGTGCTTGA CGGAACATTA 
AGCGGACAGA CAGATGATGC ACTCAAATTA TATGATAAAC TTGACTTGAT AACGGATACT 
CAGACTCTTG AAAAAGCTAT GAAAGACCTG AGCGGGGAAA TGTATTCCAA TATCACAAGA 
AGGATGGAGG ATGTATCTGA TACATTTAAT GATTCTCTAG AAGTACTTCA AAATTCGGAA 
AATAATACAA AAGAAAATGT AAAAATAAAT GTAATTGCAG GAAAAGGAAA AACAAAAGAA 
AACAGGAACG GAATACTGCC TTATGATTAC AGCAGTGTGG GAATATTGGC ACTGCGGGAA 
GTAGAACGTA CATACAGACA TACATTTGGT TATTCGCTGG GTTATCTGAA AACAAATTAT 
CAATTTCAGG ATACAAATAA TAAAGAAGAA GCAGATACAA TTCAGGCAGG ATTACATAAT 
AAATATAAAG CTGACAGCTG GACTTTTAAA ACGAATCTTT TGGGAAGAGC AGGATTTAAC 
AATACAGACA GGGAAATAGA CTGGAACAGC GGAGTTGTTT CCGAGATGAG CGGAGATTAT 
AATACATACG GAGTAACACT TTTGAATGAG ATTGCTAAGG ATATTGAAAT AGGGAAAAAT 
ACTAAAATAA TACCATATGC AGGACTGAAA ATGGAATATG GATATCATTC AGATATAAAA 
GAAAGCGGAG ATTCTGAGAG ATTAAACGTA GAGCAAAATG ATTACTACAG TATAAAACCA 
AACGCCGGAT TAGAATTTGA AACAGCGAAG TATTTCGGAG GCCATAAAAA CTGGAAAATC 
AAAATGAATA TCGGAGTTGG TTATGAATAC GAGTTTGGAG ATACAAACAG TACAGAGAGA 
GCTGGTTTTG ACACTATATC CAGTGAAAAA TTTGATTTTG GCGAATCCGG AGAGGATAAA 
GGAAAGTTTA TTACAAACGG AGGGGTCGGA ATAGAATTTC AGGACAGATA CGGTATATTT 
ATGACAGGAA AATATAAAAC AGCAGGCAGT AAAGAGGAAG ATTACCAGTT GGGTCTGAAC 
TTAAAAATAT CATTTTGA 

 

Protein sequence

MYDKTFYNPT LGAVQTWNTG LFSNYNLESG NFSYDVKIAG SNSNTTFNFN SAAGSIDPAA 
IADASLNQPA VIPTSDSYSA KVTSVPMIVS TSAPNIRIGE NTTINLISSN TANNYQYGTL 
MLQYTLTPNR SALNTDSDYA FGKGKAYPDS QAGIPFSILR NSGTINITGN YGVAGIMMNK 
NNQSGSRNDY LLVNDGTIIG EYIDSNSKQH IGLAFEGNTT PGTKGERYIL GNDGIMEFRA 
PQSAAFNFGG VNLLKYQIVY NRNTINMYGS NSFGVKMANS SLSGYTPGTD QTNTKILLED 
PINIYGDNSV GVYYSAANMK AEDSVFKVNI GTGKNNYSGN ISGNDSNYVE NSVGMYITPR 
NNNTTGTITN IVNYDIKFGD YAKNSIMFVN DGSSNSYNMS SGAFTSPLLR ETYIDNSAVT 
SVNVEAGTNN IVFFNKGGVK NVSYAYIPII YIKPDINIGT AEKAVDNTLA LYNLGAIAHL 
NGNIETYGEY SHGIYNNAAA LTSGGVVYSV GSKLDNIIDG NVKTLSIVTH GDNSAVLYNN 
ESNIDFQAGG TFKALGKNGS VLYNKNGSIS ITGDSVFEAG DNGTLIMADG GKITLSGNNI 
YNVRNNSVFA YALGNPGIKV EFSGSGQTVN LENGSIGFVY DGGSVNMQQN SLYDYLNDNF 
TGLNNLNINV SDNSRLFLIN NYGTLKLSEL EAMNTGSGLF GSVIGNSGNS LLNKGTLVLD 
TLGVINLDDP NDFYSNTDKA ATGITVDAGV TIKGTQDSQT ALSGKDIYRG TSGGSTYVVM 
NNYGNIELSG DNSLGIYTNN GLINNYSEIN TTGKNSAGLF GENSSVVKNY GNLKISDNGV 
GIYAVSYQAP DKPDEDFGSG LVDVTNTGVI SAVSSEKAVG IYVNNNKTGA LRNTGILNLS 
GGTVDMSLSK ESTGVYAVNA TVNGGGIINA GESGTGLYAK NSDLTLSDLT LNMNKDNSVG 
IYLDSDSNLN TSGTNTVNIT GKKNTIFYVN TEGTFNQNFL INGNNNADYT LMYINSNKGT 
YNGTAVLSGN STVFYGVNSV IELGTSSSLT APGGNTAGIY ADGLYGGITD YEGINKGEML 
FGDDSAGLYG INGARLLNTG NITTGSKSLG MSSEASDYLR NKGTIKTGSN SIGMSAKNTA 
LTENSGNINA AGENITALYS ENSGISVINN TGNIELTGKN TIGVYLEEGG QQTFNNNKVI 
KTENSENSSI ASTGIYNNGH IVNNTGDIIA GMSSAGIYNN NGIIRHSGSI TSEADGVGIY 
SAGGEINLTD GTIISKGFAI YAENNTKITN TGTEVNTGDK TVAYVLKSGS GLINDQNASI 
GTGSIYVYGN GTEEIVNNAS SIIMTGPESM GYYLTNSEGL INNADITGLA KGNIGIYSDK 
GSIANSGNIT LGDSEIIDEN DSSKNRYAIG IYGEDAEVNN SGNIKTGYKG TGIYTENNKL 
TNSGNITSDG EYAVGLWGSK AVIENNGEIV MNGDYSQGIM GTSQSNIVNN SIITMNGNNS 
IGISGNEGTK IQNNGIINLY GNDSTGIMLS NGSVLLNKGT INLGPGSNNA EVQNGNSVIP 
PSIVNAGVIK VDGKFELNGI NLTIQVDPES IRKPEMSEIT TDQYTTEDLK AKFLVSDAVR 
FQADSFDFSG PAMIDPLFTQ GTNALVYKFE NVFMAKDLAS AESITADSNS VTFRATPSMN 
ENGNVDIWME KIPYQYFTNG MYYDKMAEIL DKNYVLDGTL SGQTDDALKL YDKLDLITDT 
QTLEKAMKDL SGEMYSNITR RMEDVSDTFN DSLEVLQNSE NNTKENVKIN VIAGKGKTKE 
NRNGILPYDY SSVGILALRE VERTYRHTFG YSLGYLKTNY QFQDTNNKEE ADTIQAGLHN 
KYKADSWTFK TNLLGRAGFN NTDREIDWNS GVVSEMSGDY NTYGVTLLNE IAKDIEIGKN 
TKIIPYAGLK MEYGYHSDIK ESGDSERLNV EQNDYYSIKP NAGLEFETAK YFGGHKNWKI 
KMNIGVGYEY EFGDTNSTER AGFDTISSEK FDFGESGEDK GKFITNGGVG IEFQDRYGIF 
MTGKYKTAGS KEEDYQLGLN LKISF