Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4497 |
Symbol | |
ID | 5612534 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5499562 |
End bp | 5501460 |
Gene Length | 1899 bp |
Protein Length | 632 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640935474 |
Product | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA |
Protein accession | YP_001476227 |
Protein GI | 157377627 |
COG category | [D] Cell cycle control, cell division, chromosome partitioning |
COG ID | [COG0445] NAD/FAD-utilizing enzyme apparently involved in cell division |
TIGRFAM ID | [TIGR00136] glucose-inhibited division protein A |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000000347331 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCATTTTC ATGAAAGGTT CGATGTAATT GTTATCGGTG GTGGTCATGC CGGTACTGAA GCTGCGTTAG CTGCAGCCAG AATGGGATCA AAAACCCTAC TGCTGACGCA TAACATCGAT ACCTTAGGAC AAATGTCTTG TAATCCAGCC ATTGGTGGGA TCGGTAAAGG ACATTTGGTA AAAGAGATTG ATGCCTTAGG CGGAGCAATG GCGATTGCCA CTGACTATGC AGGTATTCAG TTTAGAACAC TTAATTCCAG CAAGGGCCCG GCAGTGCGAG CAACACGTGC TCAAGCAGAC CGAGCTTTGT ACCGGGCTAA GATCCAGGAA ATACTTCAAA ACCAACCGAA TTTAAGACTA TTCCAACAAG CTGTAGACGA TCTTATTGTT GAAAATGGCA AGGTAACTGG TGTGGTCACT CAGATGGGAC TGGCCTTCGA AGCGCCGGCT GTCGTGTTAA CTGCAGGGAC TTTCCTTAGT GGTAAAATTC ACATCGGGAT GCAGAATTAC AGCGGTGGTC GAGCAGGAGA TCCACCATCG ATCGCGCTGG CAGATCGATT GCGTGAACTA CCGATCCGTA TTGGACGTTT GAAAACGGGT ACACCACCAA GAATTGACGC GAATACCATT AACTTCGATC TGATGACTGA GCAGAAAGGT GATACACCAT TGCCTGTCAT GTCGTTTATT GGTGATGTGA GTCATCATCC GCGTCAGGTC TCCTGTTTCG TTACCCATAC TAACGAGCGA ACTCACGATA TTATTCGTGG TGGATTAGAT CGAAGCCCCA TGTACTCGGG GATTATCGAA GGTGTCGGGC CGCGTTACTG CCCTTCTATC GAAGATAAGA TCAATCGTTT TGCCGACAAG AGTTCACATC AGATATTTAT TGAGCCGGAA GGCTTAAATA CTAATGAGAT CTACCCTAAC GGTATATCTA CAAGCTTACC TTTCGACGTT CAATTAAATT TAGTACGTTC GATCAAGGGC ATGGAAAATG CCGAGATCAT TAGACCTGGT TATGCCATCG AATATGATTA CTTCGATCCT CGAGATCTGA AAAACTCTTT AGAGACTAAA TCTATTCAAG GTTTGTTCTT TGCCGGACAG ATCAACGGTA CGACCGGTTA TGAAGAAGCT GGTGCTCAGG GATTATTGGC AGGTATGAAT GCTTCACTGC AGGTTCAGGG CAAAGAGAGC TGGTGTCCTC GTCGTGACGA AGCCTATCTT GGTGTGTTAG TCGATGATCT ATCTACCTTG GGTACCAAAG AACCTTACCG TATGTTCACC AGCCGCGCGG AGTATCGTCT GTTACTGCGT GAAGACAATG CCGATCTGCG TCTGACCGAG AAGGGTCATC AAATTGGATT GGTCGATGAA GATCGCTGGG CTAAATTTAA TAAGAAGCGA GAGTCTATCG AACTCGAACT TCAACGTTTA AGAAGCCAGT GGGTTCATCC TAACTCGCCA TTGCTCGAGG TATTAAACCC TGAGCTGAAT ACCCCAATCT CTCGTGAAGC ATCATTCGAA GATCTACTTC GCCGTCCGGA GATGGATTAT CCGAAGTTGA TGAGCTTAGA GGGATTCGGT CCGGCACTCG AAGATCAGCG TGCTGCAGAG CAAGTGCAGA TACAAGTTAA ATATTCGGGT TATATCCAAC GCCAGCAAGA TGAGATCGAT AAAGCGATAA AACATGAAAC GACAGGTTTG CCGTTAGAGC TTGATTATCA GGAAGTTCCG GGTCTTTCAA ATGAAGTTAT CGCTAAGCTT AACGATCATA AGCCTGAAAC TATAGGTCAG GCCTCGAGAA TTTCGGGAAT GACGCCTGCT GCGATCTCTA TTTTACTGGT CCATCTGAAG CGACGCGGTC TATTACGTAA AAACCCTTCT AAAAGCTAA
|
Protein sequence | MHFHERFDVI VIGGGHAGTE AALAAARMGS KTLLLTHNID TLGQMSCNPA IGGIGKGHLV KEIDALGGAM AIATDYAGIQ FRTLNSSKGP AVRATRAQAD RALYRAKIQE ILQNQPNLRL FQQAVDDLIV ENGKVTGVVT QMGLAFEAPA VVLTAGTFLS GKIHIGMQNY SGGRAGDPPS IALADRLREL PIRIGRLKTG TPPRIDANTI NFDLMTEQKG DTPLPVMSFI GDVSHHPRQV SCFVTHTNER THDIIRGGLD RSPMYSGIIE GVGPRYCPSI EDKINRFADK SSHQIFIEPE GLNTNEIYPN GISTSLPFDV QLNLVRSIKG MENAEIIRPG YAIEYDYFDP RDLKNSLETK SIQGLFFAGQ INGTTGYEEA GAQGLLAGMN ASLQVQGKES WCPRRDEAYL GVLVDDLSTL GTKEPYRMFT SRAEYRLLLR EDNADLRLTE KGHQIGLVDE DRWAKFNKKR ESIELELQRL RSQWVHPNSP LLEVLNPELN TPISREASFE DLLRRPEMDY PKLMSLEGFG PALEDQRAAE QVQIQVKYSG YIQRQQDEID KAIKHETTGL PLELDYQEVP GLSNEVIAKL NDHKPETIGQ ASRISGMTPA AISILLVHLK RRGLLRKNPS KS
|
| |