Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4484 |
Symbol | |
ID | 5612656 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5488320 |
End bp | 5489687 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640935461 |
Product | UDP-N-acetylglucosamine pyrophosphorylase |
Protein accession | YP_001476214 |
Protein GI | 157377614 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1207] N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) |
TIGRFAM ID | [TIGR01173] UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.150295 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000109474 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCATTGA ACGTAGTGAT TTTGGCCGCA GGCAAGGGAA CCCGCATGCG CTCGGAACTA CCTAAAGTTT TACACCCTAT CGCCCATAAA AGTATGGTGC AGCATGTGAT CGACACGGCT CATAGTGTTG GTAGTGATGC TATTCAGTTG GTGTATGGCT ACGGTGCGGA AAAGCTGCAG AGTGTGTTGG GTGAGCAGCA ACTTAATTGG GTTCTGCAGG CTGAACAGTT AGGAACCGGC CATGCGGTAG CTCAGGCAAA TGATAATATT GGCGACGATG ATACTGTCTT GATCCTCTAT GGTGATGTGC CCCTTATTCA GGCTTCGACA TTAGAGGCTC TGCTTGCCGC AAGAGAAGAT AATGGCTTGG CAATATTAAC GGTAAACTTA GCTAACCCTA TGGGCTATGG TCGTATAGTT CGTGAGGCAA ATAAGGTCGT CGGTATCGTC GAGCAGAAAG ATGCCAGTGC AGAGCAGCTT GCTATCAATG AGATCAATAC AGGCATAATG GCGGCACCCG GTAAGCAACT CAAAGCCTGG CTTGGTCAGT TATCATCAGA TAACGCCCAA GGCGAGTATT ATCTTACCGA TATCGTTGCT ATGGCCCATA AAGATGGCGT TGAGATCACG ACGGCTCAGC CTGAATCGGC TATTGAAGTT GAGGGGGCTA ACAACCGGGT TCAGCTGGCT CAGCTTGAGC GTGCATATCA GGCTCGCGCA GCAGAGAAGC TGATGCTCGA AGGTGCGAAT CTCAGAGACC CTGCAAGGCT GGATATTCGT GGCGACGTCA CCGTCGGCAT GGATGTGATG ATAGATATCA ACGTCATCAT TCAGGGTAAG GTCACCATAG GTAATAATGT GACTATCGGC GCCGGTGCAA TTCTTATCGA TTGTGAGATT GGGGATAATG CCGAGATCAA GCCTTACTCA ATCGTTGAGA ATGCCAAATT GGGTGTTGAG GCCAGTGCCG GACCTTTTGC ACGTCTTCGT CCGGGCGCCG AGCTAAAGCG TGATGCCCAT ATCGGTAACT TCGTAGAGAT GAAGAAAGCT GTGTTGGGTG AGGGCTCGAA GGCGGGTCAT CTGGCCTATA TTGGTGATGC GCAGATTGGT TGCGGCGTTA ATATTGGTGC AGGTACCATT ACCTGTAACT ATGATGGCGC TAACAAGCAC CTTACCGTTA TCGAAGATAA TGTATTCGTG GGTAGTGATA CTCAACTTGT GGCTCCTGTT ACTATTGGAA AGGGGGCGAC ACTCGGTGCT GGCTCGACCA TTACCAGTAA TGTAGCCGAA GGCGAGCTGG TTATTACCCG GGTTAAACAG CGTCACCTGA CTGGCTGGGC AAGACCGGTT AAGAAACCTA AAAGCTAA
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Protein sequence | MALNVVILAA GKGTRMRSEL PKVLHPIAHK SMVQHVIDTA HSVGSDAIQL VYGYGAEKLQ SVLGEQQLNW VLQAEQLGTG HAVAQANDNI GDDDTVLILY GDVPLIQAST LEALLAARED NGLAILTVNL ANPMGYGRIV REANKVVGIV EQKDASAEQL AINEINTGIM AAPGKQLKAW LGQLSSDNAQ GEYYLTDIVA MAHKDGVEIT TAQPESAIEV EGANNRVQLA QLERAYQARA AEKLMLEGAN LRDPARLDIR GDVTVGMDVM IDINVIIQGK VTIGNNVTIG AGAILIDCEI GDNAEIKPYS IVENAKLGVE ASAGPFARLR PGAELKRDAH IGNFVEMKKA VLGEGSKAGH LAYIGDAQIG CGVNIGAGTI TCNYDGANKH LTVIEDNVFV GSDTQLVAPV TIGKGATLGA GSTITSNVAE GELVITRVKQ RHLTGWARPV KKPKS
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