| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4474 |
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| Symbol | |
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| ID | 5612864 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5463718 |
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| End bp | 5464173 |
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| Gene Length | 456 bp |
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| Protein Length | 151 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640935444 |
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| Product | BadM/Rrf2 family transcriptional regulator |
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| Protein accession | YP_001476204 |
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| Protein GI | 157377604 |
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| COG category | [K] Transcription |
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| COG ID | [COG1959] Predicted transcriptional regulator |
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| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000199058 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000296889 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGTTAA CTCGTTATAC AGACTTTGGT ATTCGCACCT TAATGTATCT GGCCATTCAA
CCGGATAGAG AAGAGTTGTT TCGCATCTCT GAAATCACTG AAGTATTTGA GCTGTCGCCT
AATCATGTCT CCAAGATAGT TCATCATCTG GGTAAGCTTG GATATCTTGA AACTATTCGC
GGTAAGAGTG GTGGTTTTCG TTTAGGTATG TCGCCTAAAG ATATCAATGT GGGTAAGTTA
GTGCGTGTAC TGGAGAACTC TTTAGCTCCA ATCGACTGCA GTAAGCCATA TTGCCGCTTT
ACGCCATCTT GTCAGCTCAA AGGCGTGCTT GCCGATGCAG TAGCCGCGTA TTTAGCCGTT
ATCGACGCGT ATACGTTGGA GGATATAGTC AGTAATAAAG ATGAGCTCAA GCAGTTACTA
CCAGAGCTTT CTATTCCGGT ATTGCAAATA GCGTAA
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| Protein sequence | MQLTRYTDFG IRTLMYLAIQ PDREELFRIS EITEVFELSP NHVSKIVHHL GKLGYLETIR
GKSGGFRLGM SPKDINVGKL VRVLENSLAP IDCSKPYCRF TPSCQLKGVL ADAVAAYLAV
IDAYTLEDIV SNKDELKQLL PELSIPVLQI A
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