| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4414 |
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| Symbol | |
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| ID | 5610588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5394349 |
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| End bp | 5395686 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640935384 |
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| Product | coproporphyrinogen III oxidase |
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| Protein accession | YP_001476144 |
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| Protein GI | 157377544 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.481198 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTCAA TTATTCAAAC GGCTAGCAGT GAAATCATTA AACCTTATGA GGCTGATATC
ACTGTGCCCA ACTGGATGCT TAGCTCTATG GAGCGAGTGA TGCAGTTCTA TGTGGATAAG
AATCTACGAC TGGATACTCA GTCTGCCGAC ATGATGCCTG CGCCGGTTGA AGGCAAGAAG
TATATGCTCT ATGCACATAT TCCTTTCTGT CATACGCTCT GCTCGTTTTG TACTTTCCAC
CGTTTTATAT TCAAAGAAGA TAAGGCGCGA GCCTATTTCG TCTCCCTCAG AAAAGAGATG
GATATGGTTA AGGCGCTCGG CTATGACTTC GAGTCTATGT ACATCGGCGG TGGCACCACG
ACTGTGCTGG AAGATGAGCT TGCCCGCACT ATTGAGCATG CCAAGACGCT ATTTCCGAGT
ATTAAAGAGG TCTCCTGTGA GTCGGACCCT CAGCATCTGG ATAGCCCCGG GTTTAAGCAG
CTCGAAGGGT TAGTCGATCG TATGTCTATC GGTGTTCAAA GCTTTAATGA TGACATTCTG
GCAATGACCG ACCGTATCGA GAAGTTTGGC TCGGGTCAGC AGACCTTCGA TAAGATTATG
GCGGCTAAGG AGCTGTTTCC GATCATTAAC GTGGATCTGA TCTTTGGTTT CCGCGGTCAA
ACCGATGAAG TGATTCAATA TGATCTGGAT ATGGCAGCGA AACTCGACCC TCGTCAGATC
ACGACCTATC CTCTGATGAT CACTCACCAG ACCCGTAAGA GTGTGAAGGG TAAACTGGCC
GCTCCTCAAG GTGATATGGC ACGTCAGTAT CGTCAAATTC TCAATAGCCT GAATGGGCAA
TACAACCAGC TTTCAGCCTG GGCGTTTGGT AAGACTAACA ACGAAGGGTT CGATGAGTAT
GTTATCGATT ATGATGAGTA CTTAGGTGTT GGCTCCGGTT CATTCAGTTT CCTGGATGAC
ACCCTATATG TGAACAACTT CTCACTGCGA AAGTATCAGG AGAATATCGC TGCAGGCCGC
ATGGGCGTCG AACAACAGAA GAACTACAGT AAGAAAGATG TGATGCAGTA TCGCTTCCTG
CTGGGTATGT TTTCCGGTCG CCTCTCACGT AAGTATTTCC GTGAGACCTT CGGAGTCAAC
TTAGACACGG CGCTGTTTAA AGAGATGACC TCGATGAAGG TGATAGGCGC AATTAAGAAC
GACCCGACCG ATCCGGATAA TCTAATCGTC ACAGATAACG GTAAGATGAT GGGCCTGTTG
ATGATGAAAG AGTTTTATTC AGGTATGGAT AATGTGCGCG CTCAACTGCG TAAGCCACTG
AAGCCCTGTG ACATGTAA
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| Protein sequence | MSSIIQTASS EIIKPYEADI TVPNWMLSSM ERVMQFYVDK NLRLDTQSAD MMPAPVEGKK
YMLYAHIPFC HTLCSFCTFH RFIFKEDKAR AYFVSLRKEM DMVKALGYDF ESMYIGGGTT
TVLEDELART IEHAKTLFPS IKEVSCESDP QHLDSPGFKQ LEGLVDRMSI GVQSFNDDIL
AMTDRIEKFG SGQQTFDKIM AAKELFPIIN VDLIFGFRGQ TDEVIQYDLD MAAKLDPRQI
TTYPLMITHQ TRKSVKGKLA APQGDMARQY RQILNSLNGQ YNQLSAWAFG KTNNEGFDEY
VIDYDEYLGV GSGSFSFLDD TLYVNNFSLR KYQENIAAGR MGVEQQKNYS KKDVMQYRFL
LGMFSGRLSR KYFRETFGVN LDTALFKEMT SMKVIGAIKN DPTDPDNLIV TDNGKMMGLL
MMKEFYSGMD NVRAQLRKPL KPCDM
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