| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4404 |
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| Symbol | |
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| ID | 5609712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5383782 |
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| End bp | 5385698 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935374 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001476134 |
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| Protein GI | 157377534 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0156105 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTA ATATGCTCAC AATTAAACAA AAGATATTGC TTACGGTGAC GCTCGCCGTG
TTGTTATCCA CTATTCTGGT TGGAGTGCTC AGTCAGCGCA GTGCGAAGGA GATTGTTGAA
CAGAGAATGT TAGGCTCTGA GATGCCAAAC ATGCTACAGC AGATCCGCAA CAAGGTTGAA
CTCGATATTT CAACCTTAAT GAATGCCGCC GAGCAACTTG CAAATAGCCG CATGTTAATC
CAATGGTTAG AAGATGGACG ACCAGCAGAA AGTGAAAGCT TAGTCACCAA CCAGCTTAAA
GATATCACCC AGCAGTATGG TTTAGCACAA GCATCATTCG CAGATCGCGA AACTGCCGCC
TATTATACTC AGGACGGTTT CTTGCGTGAA CTCACTCCAT CTCAAGATGG CTGGTTCTTC
GATTATAAAA ACAGTGGCAC GGAGCGCATG CTCAATGTCT TTACCGAAGC CAATGGCGAT
GTGAAGTTGT TCATAAACTA TCAACAACCT AATGGCCGTG GCTTAGTCGG ATTGGCGAAG
TCACTCGATG ACATGGTCAG GTTACTCGCC TCCTTTAAAA TTGAAGAGAC GGGCTTTGTT
TATCTCGTCG ACGCTAAAGG CCAGGTAAAA CTGCATCAGG ATACGTCTAA AATCGGCAAT
GCCGATCTCA ATAGCTTCTA CCGAGACAGC AACACCAATA GCCTGCTTAA TCGCAGCGAC
TTCAGTTTAC TGAAAACCGA AGTCGATGGT GAGACTATGC TCGTCGCCAG TAGTTATATC
CCATCGATGA ATTGGTATTT GATTGCACAG GTACCCGAAG GTGAGGTTTT TGCCCTGCTT
GAAGAGTCTG CCTACAAGAT CTTAATCTGG ACACTGCTGA TTGCCGCAGG CTTTATCGTA
TTGGCCACTT TTGTTGCCGG CTCAGTCAGT CGCCCCATAT CCGTCGTTGC CTCTATGCTG
CAAAATATTG GTGAAGGTGA AGGCGACTTG CGTCAACGCC TGCCCGTCGA AGGTAATGAT
GAACTCACTC AGCTCGCAAA AGGATTTAAC AGCTTCATCA GTAAAATCCA AGCCTCAATT
ATTGAAGTAG CCGAAACCAG TGAGCAATTA AGCCTATCGG CTAAAGATGT CGCCAATCAG
GCACAGCAAA CCCTATCCGA TAGTCAATTA CAGAAAGATC AGACCATGAT GGTGGTTACC
GCCATCAATG AGATGGGAGC AACGGTTAAC GAAATCGCCG GTAATGCTGC TCAGGCCGCC
GATACCGCAA AAAATGCCGA TACCGAATCC AATACAGGTC AGGTTGTCGT CACACGTGCT
CGCGATACCA TCAACCAGCT GTCGAATGAT GTAGAGCAAG TCGGAGAGGT CATTGAATCT
TTAGCGACTC ATACTAAGTC GATTGGCGGT ATTTTAGATG TTATCCGCGC CGTATCTGAG
CAGACCAACT TACTCGCGCT GAATGCTGCA ATCGAAGCGG CACGAGCAGG TGAAGCCGGA
CGTGGATTTG CCGTCGTTGC CGATGAAGTT CGTAACCTTG CCTCGCGCAC AGCAGAGTCG
ACCAACGAAG TGCAGATCAT GATCGATAAG TTGCAGTCTG AGGCCAGCAG AGCTGTCGAT
GCCATGACGC AGAGTCGTTC TCGCTCGATT GAAGGTGTCA CAGCCGTCGA TGAGGCGAGT
CAGTCGCTAT CGGGGATCAG TGAGCAAATT GGTCAGATTA CAGACATGAA CATTCAGGTG
GCTGCAGCGA CTGAAGAACA GTCAACCGTG GTTGAAGATA TCAACCGTAA TGTCACCGAG
ATCAGTGACA TTACACAAAG AACTGCTGAC ACCTCTGAAG CTGTTGCTCA AGCGAGCCAA
TCCCTCAATC AGCTAGCCAA CCGCTTGGAT ACCTTAGTGG CGGGCTTTAA GGTATAA
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| Protein sequence | MKFNMLTIKQ KILLTVTLAV LLSTILVGVL SQRSAKEIVE QRMLGSEMPN MLQQIRNKVE
LDISTLMNAA EQLANSRMLI QWLEDGRPAE SESLVTNQLK DITQQYGLAQ ASFADRETAA
YYTQDGFLRE LTPSQDGWFF DYKNSGTERM LNVFTEANGD VKLFINYQQP NGRGLVGLAK
SLDDMVRLLA SFKIEETGFV YLVDAKGQVK LHQDTSKIGN ADLNSFYRDS NTNSLLNRSD
FSLLKTEVDG ETMLVASSYI PSMNWYLIAQ VPEGEVFALL EESAYKILIW TLLIAAGFIV
LATFVAGSVS RPISVVASML QNIGEGEGDL RQRLPVEGND ELTQLAKGFN SFISKIQASI
IEVAETSEQL SLSAKDVANQ AQQTLSDSQL QKDQTMMVVT AINEMGATVN EIAGNAAQAA
DTAKNADTES NTGQVVVTRA RDTINQLSND VEQVGEVIES LATHTKSIGG ILDVIRAVSE
QTNLLALNAA IEAARAGEAG RGFAVVADEV RNLASRTAES TNEVQIMIDK LQSEASRAVD
AMTQSRSRSI EGVTAVDEAS QSLSGISEQI GQITDMNIQV AAATEEQSTV VEDINRNVTE
ISDITQRTAD TSEAVAQASQ SLNQLANRLD TLVAGFKV
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