| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4394 |
|---|
| Symbol | |
|---|
| ID | 5609997 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5375380 |
|---|
| End bp | 5375739 |
|---|
| Gene Length | 360 bp |
|---|
| Protein Length | 119 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640935364 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001476124 |
|---|
| Protein GI | 157377524 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3111] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00156] conserved hypothetical protein TIGR00156 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000138703 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000181624 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAAA AATTAACCGG CTCCATCATC TTATCTTGTG TATTAACCCT GCCAGCATTT
GCTGCCTATA ACGGTCCGGG AGTTAATAGC CATGCAAAAA CGGCGGCCGA AGCCGGTAAA
GCGAAAGATG ACACTCCAGT AGAGCTGACG GGACATCTGG TTAAAAGCTT AGGCGATGAA
AAGTACCTTT TCCGGGATAC GACCGGCGAT ATTGAGGTCG AGATTGATGA TGCGCTTTGG
CGTGATATCG AAGTCTCCAG CGATACAACT GTGACGCTCA GAGGCGAGGT CGATGATGAG
TGGCAAGGTA TCGAGATCGA AATTGACAGT ATCGACCTGA TTAACGAATC GGGTGTTTAG
|
|---|
| Protein sequence | MSKKLTGSII LSCVLTLPAF AAYNGPGVNS HAKTAAEAGK AKDDTPVELT GHLVKSLGDE
KYLFRDTTGD IEVEIDDALW RDIEVSSDTT VTLRGEVDDE WQGIEIEIDS IDLINESGV
|
|---|
| |