| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4358 |
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| Symbol | |
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| ID | 5609716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5333954 |
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| End bp | 5336128 |
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| Gene Length | 2175 bp |
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| Protein Length | 724 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640935328 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001476088 |
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| Protein GI | 157377488 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000917218 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAATA AGAAATTTCG CCACAAGCTT ATCGCCGGCA TGGTGATGGG GGCCTCACTT
TTAGCTCCTC AAATCGCTTG GTCTGAGCAG TATGCGGCAA ATTTTAAAGG GACAGATATT
CAAGAGTTTA TCAACATCGT TGGTAAAAAC CTGAATAGAA CCATCATCGT AGACCCAACG
GTTCGTGGCA AAATAAATGT CCGAAGCTAT GACCTGCTTG ACGATGAGCA GTATTATCAA
TTCTTCCTCA ATGTGCTCCA GGTTTATGGC TATGCGGTCG TAGAGATGGA CAACAACATC
ATCAAGGTGA TCAAGGATAA GGATGCCAAG ACGGCATCGA TCAGGGTTGC CGATGATGAT
AGACCCGGTT TAGGCGATGA GATGGTGACA CGTATTGTTG CCCTCTATAA CACAGAAGCC
AAACAGTTGG CTCCACTGCT ACGCCAACTC AATGACAATG CCGGTGGCGG TAATGTCGTT
AACTATGACC CATCGAATGT GTTGATGATC TCCGGCCGTG CAGCCGTGGT AAACAAATTA
GTTGAGATCG TTCGCCGCGT CGATAAGCAG GGCGATACAG AGGTTCAGGT GGTCTCCCTT
GAGTTTGCAT CGGCGGGTGA AATCGTTCGA ATTATCGATA CCCTCTATCG CTCGACTGCC
AATAAGTCTC AGTTGCCGGG TCAGGCACCA AAAGTGGTGG CCGATGAGCG CATGAATGCT
GTTTTAGTCA GTGGTGATGA GAAGAGCCGT CAGCGTGTGG TGTCACTGAT TAAGAAGCTG
GATGCCGAGC AAGCCAGTAT GGGTAACACT AAGGTTCGTT ACCTGCGTTA TGCCAATGCG
GAAGATCTGG TCGAGGTGTT GACCGGGTTT GCCCAGAAGT TGGTCGATGA TAAAGATGGT
GGCGCGCAGC AAGGTGGCAG TAAACGTCGT AATGAAATTA ACATTATGGC CCATGCCGAC
ACCAACGCCT TGGTCATCAG CGCCGAGCCG GATCAGATGC GCACCATCGA GAGTGTTATC
AATCAGCTCG ATATTCGCCG TGCTCAGGTA TTGGTGGAGG CGATTATCGT TGAGGTCGGC
GAAGGGGATG ATGTTGGCTT CGGCGTACAG TGGGCCACAG CTGCCGGCGG TGGTACTCAG
TTTAATAATT TAGGCCCTAC AATTGGTGAA ATTGGCGCCG GTGTCTGGCA GGCTCAGGAA
AAAGAGGCTT CTCAAACCTG TACCGGATCG GGTGATAACA AGACCTGTAC CGATAACCCC
GCGACTCAAG GTGATATCAC CTTGTTGGCT CAAGCCTTAG GCAAGGTTAA CGGTATGGCA
TGGGGTGTTG CCATGGGCGA CTTCGGGGCA CTTATTCAGG CCGTTTCCAG CGATACGAAA
TCGAATGTGC TCGCGACTCC CTCTATCACC ACACTGGATA ACCAGGAAGC GTCGTTTATC
GTCGGTGATG AGGTACCAAT TTTGACCGGC TCGACTTCGA GTTCGAGTAA TACCAACCCA
TTCCAAACGG TGGAACGTAA AGAGGTCGGG GTTAAGCTTA AAGTTGTGCC TCAGATCAAC
GAAGGTACCT CGGTTAAGTT AACCATCGAG CAGGAAGTCT CTGGCATTAA CGGTAAAACC
GGTGTCGATG TAACCTTCGC GACCCGTCGT CTGACAACCA CTGTAATGGC CGATTCGGGT
CAGATTGTGG TCTTGGGGGG CTTGATCAAA GAAGAGGTGC AGGAGAGTGT ACAGAAAGTC
CCCTTCCTCG GCGATCTTCC TATTATCGGT CATCTGTTCA AGTCTTCATC AAGCGGTACG
AGAAAAACTA ATTTGATGGT GTTTATCAAG CCAACCATTA TTCGTGACGG CATTACCATG
GAAGGCATCG CAGGGCGTAA GTACAACTAC TTCCGAGCTC TGCAGCTTGA GCAGCAGGAT
CGCGGTATTA ACTTAATGCC AGACAGCGAA GTGCCTATAC TCGAAGAGTG GAACCAATCC
GATTACCTTC CACCCGAAGT TAACGAGATC CTTGAGCGTT ATAAAGAGGG CAAAGGTCTA
GCTACTAAGA TGCGTGAAAC GGATCCGGCC TTGAAGACGA TATCTGAGAG TAAAGAAAAA
GATCAACAAG AGAGCGAAGA AAGCTCAAGC GAAAATAACA CTTCAGCCAC CACCGAAGAT
AAAGATGATG AGTGA
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| Protein sequence | MNNKKFRHKL IAGMVMGASL LAPQIAWSEQ YAANFKGTDI QEFINIVGKN LNRTIIVDPT
VRGKINVRSY DLLDDEQYYQ FFLNVLQVYG YAVVEMDNNI IKVIKDKDAK TASIRVADDD
RPGLGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVLMI SGRAAVVNKL
VEIVRRVDKQ GDTEVQVVSL EFASAGEIVR IIDTLYRSTA NKSQLPGQAP KVVADERMNA
VLVSGDEKSR QRVVSLIKKL DAEQASMGNT KVRYLRYANA EDLVEVLTGF AQKLVDDKDG
GAQQGGSKRR NEINIMAHAD TNALVISAEP DQMRTIESVI NQLDIRRAQV LVEAIIVEVG
EGDDVGFGVQ WATAAGGGTQ FNNLGPTIGE IGAGVWQAQE KEASQTCTGS GDNKTCTDNP
ATQGDITLLA QALGKVNGMA WGVAMGDFGA LIQAVSSDTK SNVLATPSIT TLDNQEASFI
VGDEVPILTG STSSSSNTNP FQTVERKEVG VKLKVVPQIN EGTSVKLTIE QEVSGINGKT
GVDVTFATRR LTTTVMADSG QIVVLGGLIK EEVQESVQKV PFLGDLPIIG HLFKSSSSGT
RKTNLMVFIK PTIIRDGITM EGIAGRKYNY FRALQLEQQD RGINLMPDSE VPILEEWNQS
DYLPPEVNEI LERYKEGKGL ATKMRETDPA LKTISESKEK DQQESEESSS ENNTSATTED
KDDE
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