| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4328 |
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| Symbol | rplK |
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| ID | 5610387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5300215 |
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| End bp | 5300643 |
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| Gene Length | 429 bp |
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| Protein Length | 142 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640935291 |
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| Product | 50S ribosomal protein L11 |
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| Protein accession | YP_001476060 |
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| Protein GI | 157377460 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0080] Ribosomal protein L11 |
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| TIGRFAM ID | [TIGR01632] 50S ribosomal protein L11 |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000353515 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000170841 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCTAAGA AAGTTGATGG TTACATCAAA CTACAAGTAG CAGCCGGTGC TGCAAACCCG
TCGCCACCAG TCGGCCCTGC ATTGGGTCAG AAAGGTGTTA ACATCATGGA ATTCTGTAAA
GCATTCAATG CTCGTACTGA AAAGTTCGAG AAAGGCATGC CAATTCCAGT TGTTATCACT
GTATATACTG ATCGCTCTTT CACTTTTGAA ACTAAGACGC CACCTGCATC TTTCCTACTG
CTTAAAGCAG CAGGTCTGAA ATCAGGTTCA GGTCGTCCTA ACACTGAAAA AGTGGGAACT
ATCAAGCGTA GCGCTGTTCA GGAAATTGCT GAAACTAAAG CTACTGATAT GACTGGTGCT
GATATTGAAG CGATGACTCG CTCAATTGAA GGTACTGCGC GTTCAATGGG TTTGGTAGTA
GAGGATTAA
|
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| Protein sequence | MAKKVDGYIK LQVAAGAANP SPPVGPALGQ KGVNIMEFCK AFNARTEKFE KGMPIPVVIT
VYTDRSFTFE TKTPPASFLL LKAAGLKSGS GRPNTEKVGT IKRSAVQEIA ETKATDMTGA
DIEAMTRSIE GTARSMGLVV ED
|
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