| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4294 |
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| Symbol | |
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| ID | 5613994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5271672 |
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| End bp | 5272661 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935257 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_001476026 |
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| Protein GI | 157377426 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0542949 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000176311 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGGGTT CTGTTACAGA ATTTCTTAGA CCGCGTCTCG TTGATATCGA GCAGGTTAAT
CCAACACGTG CCAAAGTTAC ACTTGAGCCG CTTGAACGTG GTTTTGGTCA CACTTTAGGC
AACGCGTTGC GTCGTATCCT ATTGTCGTCT ATGCCAGGCT GCGCGGTAAC CGAAGTAGAA
ATTGATGGTG TACTGCATGA ATACAGTAGC AAGGAAGGCG TGCAAGAGGA TATCCTTGAG
ATCCTACTAA ACCTTAAGGG GTTAGCAGTA GTGATCGAAG GGAAAGACGA AGCTATGCTT
ACTTTAAGTA AGTCAGGCGC AGGCCCTGTT ACTGCAGCAG ATATCACGCA TGATGGTGAT
GTTACTATCA TGAATCCTGA CCATGTTATC TGTCATTTGA CTGGTAATAA TGATGTCAGC
ATGCGAATTC GTGTAGAGCG TGGTCGTGGT TATGTACCGG CATCAGCCCG TGCACAAACC
GAAGACGATG ATCGCCCTAT CGGTCGTTTG TTGGTGGATT CTTCATTCTC ACCTGTCGCT
CGTATAGCCT ACAATGTAGA AGCTGCACGT GTTGAACAGC GTACTGACTT AGATAAACTC
GTTATCGATA TGACCACAAA CGGTACTATC GATCCTGAGG AAGCTATCCG TCGTTCTGCA
ACTATTCTAG CTGAACAGTT AGATGCGTTT GTTGAGCTAC GTGATGTTAC TGAGCCAGAG
CAGAAAGAAG AGAAGCCGGA GTTCGATCCG ATTCTGTTGC GTCCTGTGGA CGATTTAGAG
CTAACTGTAC GTTCAGCTAA CTGTTTGAAG GCTGAAGCGA TTCATTACAT CGGTGATCTG
GTACAGCGCA CAGAAGTTGA GCTGCTTAAG ACTCCTAACT TAGGTAAGAA ATCTCTTACT
GAAATTAAGG ATGTTTTAGC TTCTCGCGGA CTGTCGTTAG GTATGCGTCT CGAAAACTGG
CCTCCGGCTA GTTTAGCAGA CGACCTTTAA
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| Protein sequence | MQGSVTEFLR PRLVDIEQVN PTRAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE
IDGVLHEYSS KEGVQEDILE ILLNLKGLAV VIEGKDEAML TLSKSGAGPV TAADITHDGD
VTIMNPDHVI CHLTGNNDVS MRIRVERGRG YVPASARAQT EDDDRPIGRL LVDSSFSPVA
RIAYNVEAAR VEQRTDLDKL VIDMTTNGTI DPEEAIRRSA TILAEQLDAF VELRDVTEPE
QKEEKPEFDP ILLRPVDDLE LTVRSANCLK AEAIHYIGDL VQRTEVELLK TPNLGKKSLT
EIKDVLASRG LSLGMRLENW PPASLADDL
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