| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4282 |
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| Symbol | |
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| ID | 5612035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5261806 |
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| End bp | 5262288 |
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| Gene Length | 483 bp |
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| Protein Length | 160 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640935245 |
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| Product | cytochrome c biogenesis protein |
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| Protein accession | YP_001476014 |
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| Protein GI | 157377414 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3088] Uncharacterized protein involved in biosynthesis of c-type cytochromes |
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| TIGRFAM ID | [TIGR03147] cytochrome c nitrite reductase, accessory protein NrfF |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.100149 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0369592 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATAAGT TGATATTTAA GTTTGTCGGC ATGATTCTTT TGTCTATGAC ACTGATCTCA
TCGGCCTTTG CAACTCCGGT CGATACTTAC GAGTTTAAAT CTGTAGAGAA TCAAAAACGA
GCGCTAGAGT TAGCTCACTC GCTTCGCTGT CCGCAGTGTC AGAATCAAAA TCTAATTGAT
TCAAACTCAC CCGTTGCGCA AGATCTCCGT CTTGAAGTGT ATGAGATGGT TGATGCAGGT
AAAGACGACG AGGAAGTCAT CGAGTTTATG ACCAGCCGTT ATGGTGAGTT CGTACTCTAT
AAGCCAAGAA TGGAAGCAAA GACCTATGTT TTATGGTTAG GTCCGGTTGC ATTACTCCTA
TTTGGCTTGT TGATTGGCTT CTTCTTTATA CGTAAGCAAC GTATATCTGA AGTCGATGAG
CAGGAGCTCA GTGCTGAAGA GCAAAAAGAG TTAGATAAAT TGCTTAAGCG AGATGATAAA
TGA
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| Protein sequence | MNKLIFKFVG MILLSMTLIS SAFATPVDTY EFKSVENQKR ALELAHSLRC PQCQNQNLID
SNSPVAQDLR LEVYEMVDAG KDDEEVIEFM TSRYGEFVLY KPRMEAKTYV LWLGPVALLL
FGLLIGFFFI RKQRISEVDE QELSAEEQKE LDKLLKRDDK
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