| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4278 |
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| Symbol | |
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| ID | 5612015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5250464 |
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| End bp | 5253100 |
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| Gene Length | 2637 bp |
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| Protein Length | 878 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935238 |
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| Product | phosphoenolpyruvate carboxylase |
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| Protein accession | YP_001476010 |
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| Protein GI | 157377410 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2352] Phosphoenolpyruvate carboxylase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.419374 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGATA TGTATGCGTC TTTAAGGTCA AATGTGGGTA CCTTAGGGCA AATTCTTGGT
GAGACAATAC GCACCAATTT AGACGATGCT TTTCTTGAAA AGATCGAGCA GATCCGTCAA
CTGGCAAAGA GTTCTCGGCA AGGAGATGAA GCAGCAAGAG ATGAGATGCT CAAACTGCTC
ACTGCACTGC CAGATAATGA ACTGGTTCCC TTCGCAAAAG CCTTTAACCA ATTTCTCAAC
TTGGCTAATA TCGCCGAACA GTTTCACACC ATCAGTCGCA ACTGTGACGA ACTGGTCTGT
GTCCCAGACC CGGTTGAACA GCTGTTAGGG CGAGTACTGA GTAGCAACAT AGATCAAGAG
AAGATGCTCG ATTGTCTGGA AAATTTAGAT ATCGACTTGG TACTGACAGC GCATCCGACA
GAGATTTCTC GCCGAACACT CATTCAAAAA TATGCATCGG TGATCGATAT TTTGGCTGCA
TTGGAAAATC CGCAGCTCAC CGAAAGAGAG AAGAAACAAC AGCACCTGCG CTTGCGTCAA
TTGATTGCCC AGATTTGGCA TACCAATGAG ATCAGAAATG AAAGGCCAAC CCCTGTCGAC
GAAGCGCGTT GGGGCCTGAG CACGATCGAA GTCTCTCTCT GGCAGGCTAT TCCCGATTTT
CTCAGACAAC TCAACGAACA GGTTGAGGAA CGCACAGGCA AACAACTGCC TACGGATATA
GCGCCGGTAC GCTTCTCGAG CTGGATGGGG GGAGACCGTG ATGGCAACCC TTTCGTAACC
GCAAAAGTCA CTCAAGAGGT ACTCGATCGT AACCGTCACA CGGCGGCCCG TCTCTACCTG
AAAGATATTG TCGTGCTTGT TAATGACCTC TCGGTGGAAG AAGCCAATGC AGAATTATTG
GAATATACTA ATAATAGCCT TGAGCCCTAT AGAGATGTAC TTAAAGACCT TAGACAAAAA
TTACGTAACA CCGTTGACTA CCTTAATGCG CGCCTCGAAG GTCACAGCCC TGAAATAGAC
CTAAGCTCAA TAATTTGGCA CGAAAGCGAT CTAAAAGAGC CACTATTAAT GCTATATAGA
AGTCTAACAG ACTCAGGTAT GAGCCTGATC GCCCATGGAC TCTTGTTAGA TATTTTACGT
CGCATCGCCT GTTTTGGCAT TCACATGCTA AGGCTGGATA TCAGGCAGGA TGCCGAACGC
CATAGCGATG TCATTGCTGA GTTAACCCGT TACTTAGGCA TGGGCGATTA CAACCATTGG
GATGAGAGTG AAAAACAAGC ATTTCTCCTG AGAGAGCTAA CAGGCAAGCG ACCGCTGATC
CCATCTAACT GGCAACCCAG TGATGATGTT GCAGAAGTCG TGAGTACCTG TCGCCTTATA
GCGACTCAAC CAGCTCGAGC CCTTGGGTCC TATGTTATCT CCATGGCCAG CAAGCCGTCG
GACGTTTTAA CCGTTTTATT GTTATTAAAA GAAACGGGCT GTCCACACCC TATGCGGGTC
GTTCCTTTAT TTGAGACTCT CGATGATCTC AATAATGCCT CGAGTTGTAT GACTGCACTA
TTTGCTATTG ATTGGTATCG TGGTTACACC AAAGGCCATC AAGAAGTCAT GATAGGTTAC
TCAGATTCGG CAAAAGATGC CGGTGTGATG GCCGCAGCCT GGGCTCAATA TCATGCTCAA
GAAGAGCTGG TAGAGGTAAG CAGACAAGCA GAAGTTAAGT TAACCTTATT TCATGGCCGA
GGCGGCACTA TTGGACGTGG CGGCGGACCT GCGCATGAGG CGATCCTTTC ACAACCACCA
GGCTCTGTCG ATGGTCGCAT TCGAGTTACA GAACAAGGCG AGATGATCCG CTTTAAGTTT
GGCCTGCCTA AACTCGCAGT TCAAAGCCTA GCCCTGTATA CCTCTGCGGT AATGGAGGCA
ACCCTCCTGC CGCCTCCGGA ACCTAAGCCC GAATGGCGCG CCTGTATGCA AAAGCTAGCC
GAAGAGTCGG TCGATGCCTA TCGCTCCATT GTGAGAGACG AGCCTGATTT TGTCGCCTAT
TTCCGCGCAG CAACCCCAGA GGTTGAACTG GGTAAATTAC CTTTAGGTAG CAGACCGGCA
AAACGTAGAG TCGATGGAGG AATCGAAAGT CTACGTGCAA TACCTTGGAT ATTTGCATGG
TCACAGAACC GCTTGATGTT ACCCGCATGG CTTGGAGCCG GTGAAGCCCT GCAAGCGGCA
AGCGATCGTG GAGAGATGGC ATTACTACAG GAGATGGAAC AAGATTGGCC ATTCTTCAAG
ACTCGTATAT CTATGTTAGA GATGGTCTAC GCTAAGGCTG AACCAAACCT CGCAAAATAT
TATGAAACGT GCTTAGTACC AGAAAACCTC CACCATTTGG GTGAAGCACT TCGCACTCGT
CTGGCGACGG GTATCAAAGC CGTCTTAGAA TTAACCCAGT CTAATGCTCT TATGGAGCAC
ACCCCCTGGA ATAGAGAGTC TGTGACGCTT CGCAACCCCT ACATCGACCC CCTTAACTTT
GTGCAAGCAG AACTGTTAGC GCGTACTCGT AAAGAAGAGG AAGCGTCGAC CAATGTAGAA
CTGGCGTTGA TGATAACCAT TGCTGGAGTT GCAGCAGGCA TGAGAAATAC CGGCTAA
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| Protein sequence | MADMYASLRS NVGTLGQILG ETIRTNLDDA FLEKIEQIRQ LAKSSRQGDE AARDEMLKLL
TALPDNELVP FAKAFNQFLN LANIAEQFHT ISRNCDELVC VPDPVEQLLG RVLSSNIDQE
KMLDCLENLD IDLVLTAHPT EISRRTLIQK YASVIDILAA LENPQLTERE KKQQHLRLRQ
LIAQIWHTNE IRNERPTPVD EARWGLSTIE VSLWQAIPDF LRQLNEQVEE RTGKQLPTDI
APVRFSSWMG GDRDGNPFVT AKVTQEVLDR NRHTAARLYL KDIVVLVNDL SVEEANAELL
EYTNNSLEPY RDVLKDLRQK LRNTVDYLNA RLEGHSPEID LSSIIWHESD LKEPLLMLYR
SLTDSGMSLI AHGLLLDILR RIACFGIHML RLDIRQDAER HSDVIAELTR YLGMGDYNHW
DESEKQAFLL RELTGKRPLI PSNWQPSDDV AEVVSTCRLI ATQPARALGS YVISMASKPS
DVLTVLLLLK ETGCPHPMRV VPLFETLDDL NNASSCMTAL FAIDWYRGYT KGHQEVMIGY
SDSAKDAGVM AAAWAQYHAQ EELVEVSRQA EVKLTLFHGR GGTIGRGGGP AHEAILSQPP
GSVDGRIRVT EQGEMIRFKF GLPKLAVQSL ALYTSAVMEA TLLPPPEPKP EWRACMQKLA
EESVDAYRSI VRDEPDFVAY FRAATPEVEL GKLPLGSRPA KRRVDGGIES LRAIPWIFAW
SQNRLMLPAW LGAGEALQAA SDRGEMALLQ EMEQDWPFFK TRISMLEMVY AKAEPNLAKY
YETCLVPENL HHLGEALRTR LATGIKAVLE LTQSNALMEH TPWNRESVTL RNPYIDPLNF
VQAELLARTR KEEEASTNVE LALMITIAGV AAGMRNTG
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