| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4271 |
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| Symbol | |
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| ID | 5611911 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5240608 |
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| End bp | 5243139 |
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| Gene Length | 2532 bp |
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| Protein Length | 843 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935231 |
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| Product | peptidoglycan glycosyltransferase |
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| Protein accession | YP_001476003 |
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| Protein GI | 157377403 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.600271 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGTGGT TAAAACGTAT TATTATTGCT CTATTCAGCC TAGCTCTTTT GGGCGTTGGC
GCCATTGCTG CGGCCTATTT TTATGTGTTG CCCGAACTCC CGGACGTAAA CACGTTAAAA
ACGGTAAAAC TTCAAACCCC ATTACGCATA TACAGTAGTG ACGGCAAGCT GATCTCTCAA
TTTGGTGAAA AGAGACGAAT TCCGGTTGAT TTTCAAAATG TTCCCCCACT TCTTATCGAT
GCTGTTTTAG ATACGGAAGA TGCCAGGTTT TTCGAACATC ATGGTATCGA TCCTATCGGT
ATCACTCGTG CGGCATTCAT TCTTTTAACC ACAGGAAAAA AGAGCCAGGG GGCTAGCACC
ATCACCCAGC AGGTAGCACG AGGCTTCTTC CTTTCCCGTG AAAAGACCTA CATACGTAAA
ATTAAAGAAA TTTTTCTAGC CATAAAAATT GAGAAGGCCT TATCTAAAGA GAAAATTTTA
GAGCTGTATC TAAATCGCTC TTTCTTAGGT AATCGCGCCT ATGGTGTCGG CGCCGCTGCA
CAGGTCTATT ATGGCAAAGA ATTAAATCAG CTAACCCTAC CAGAGATGGC AATGATCGCC
GGTCTACCTC AGGCACCTTC AGCAGCCAAT CCTATTCGTA ATCCTGCAAG AGCGATGAAT
CGTCGTAATT GGGTATTGAG CCGTATGTTA GAGAAGCAAA ACATTACTCA GGCTCAGTAT
ATGGAGGCAA CCCAATCTCC CATCACGGCG AAATATCACG GGGCTGAAAT TAATCTCTAT
GCTCCCTATA TTTCAGAGAT GGCGAGAGAC TATTTAGTTG AAAAATATGG TGAAGAGGAG
GCTTACACTG GTGGCTATAA CATCTATACC AGCATTGATT CCACGCTTCA GCTAGAGGCT
CAGCAGGCAC TGAGAAACAA TGTCTACGCC TATGATGAGC GACATGGCTA CCGCGGCCCG
AAAGCCGTTC TTTGGACCGA TAGTCCACTG AACAATCAAG ATATTATCGA CCGTCTAAAA
CAGACCAAAG CATTTCAAGG CCTATTACCC ACTGCTATCA TAAGTATGAG CGAGCAAAGT
GTTCGAGTGC TCACCGCCAA AGGTGAAACG TTAGAGATTG ACTGGCAAGG GCTAAAGTGG
GCCCGTAAGT TCATCTCTAA TAAACGTCAG GGAAAAGCCC CTAAAATGGC CTCTGAAGTT
GTCGCTGTCG GTGAACAGGT ATGGATTCGC AATAATGGGG AATTTTGGCA GTTAGCTCAA
ATTCCTGAAG TAGCCAGTGC AATTGTCTCC CTCGACCCCC ATGACGGCGC CATACGTACT
CTGGTCGGTG GCTTTAGTTT CCATACCAGC CAATACAACC GTGTAACTCA GGCTAAGCGT
CAACTAGGTT CAAATATTAA ACCCTTTATC TATACAGCGG CGATGGAGAA AGGCTATACC
CTGTCGACCT TAATCAACAA TGCACCGATT AATAATGCCG ATACCAGACA AGGTACTGCA
TGGCGCCCTA AGAACTCACC AGATCGGTAT ACAGGGCCAA CCAGGTTACG TGTCGGACTT
GCGCAATCGG TCAACGTCAT GTCTGTCAGG ACTATGCGTT ATGCCGGTCT CGATATGGCT
ATCAATACTT TAGTCAAATT TGGTTTCAAT GCCGAAGATA TCCCAAGAAA TGAGTCCATC
GCATTAGGCT CAAACTCGGT AACCCCACTT CAAGTCGTTA CCGCATTTTC TACCTTTGCC
AATGGCGGAT ATAGAGTTGA ACCCTATTTT GTTGAACGAA TTGAAGATTC TTACGGGCAG
ATCATCGAAC AATCGAATCC AACCCTTGCC TGCAAGCCCG AACCAGACCA GTTAGAAGCA
GCCACTGAGG ATCCTTTTGC CTCTATGGCT GATGAGCTAC AGCAGCCAAC AACTCAAGTA
ACAGAGCCAA GTTGTGGTGA TAAAGACAGT CGATATGCGC CCCAAATCAT CTCTGAACAA
ACCGCATTCC TGATAACCGA TGCATTAAAG AGTGTTATCT GGGGCGGCGG CAACTGGAGC
AAAGGGACTG GCTGGAATGG TACGGCCTGG CGAGCGGCAA GAGTCGTAAA AAGACATGAT
ATTGCCGGAA AGACAGGAAC AACCAACGAA TCCCGGGATA CCTGGTTTAG TGGATTTAAC
CCCAAACTCG CCACAACGGT GTGGGTAGGC TTTGACGATC ACAGTAAGGA GTTGGGCAGA
ACCAGTTGGA ATGCTAATGC CGCAAAAGAT CAAATTTCTG CAGCAGAGGC AGGGGCAAAG
ACTGCAGGAC CGGGATGGAA TGAGTTCATG AAAAATGCCC TATCCGGTAC GCCTGAAGCT
CCGACGACTC CGCCAGAAGG TATCATCTCT GTAAGAATAG ATCTGGCAAC CGGAAAGTTA
AGCCGCAAAA CCGATTACAC CAGTAGATTT GAGTATTTTG TATCAGGCAC AGAACCAAAA
GAATTCGCAA CAGAAGCTGA AGAGGTAAAC GACATCTTCA TCGAAGACTC CACTGAGGAG
CTGTTCCAGT AA
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| Protein sequence | MKWLKRIIIA LFSLALLGVG AIAAAYFYVL PELPDVNTLK TVKLQTPLRI YSSDGKLISQ
FGEKRRIPVD FQNVPPLLID AVLDTEDARF FEHHGIDPIG ITRAAFILLT TGKKSQGAST
ITQQVARGFF LSREKTYIRK IKEIFLAIKI EKALSKEKIL ELYLNRSFLG NRAYGVGAAA
QVYYGKELNQ LTLPEMAMIA GLPQAPSAAN PIRNPARAMN RRNWVLSRML EKQNITQAQY
MEATQSPITA KYHGAEINLY APYISEMARD YLVEKYGEEE AYTGGYNIYT SIDSTLQLEA
QQALRNNVYA YDERHGYRGP KAVLWTDSPL NNQDIIDRLK QTKAFQGLLP TAIISMSEQS
VRVLTAKGET LEIDWQGLKW ARKFISNKRQ GKAPKMASEV VAVGEQVWIR NNGEFWQLAQ
IPEVASAIVS LDPHDGAIRT LVGGFSFHTS QYNRVTQAKR QLGSNIKPFI YTAAMEKGYT
LSTLINNAPI NNADTRQGTA WRPKNSPDRY TGPTRLRVGL AQSVNVMSVR TMRYAGLDMA
INTLVKFGFN AEDIPRNESI ALGSNSVTPL QVVTAFSTFA NGGYRVEPYF VERIEDSYGQ
IIEQSNPTLA CKPEPDQLEA ATEDPFASMA DELQQPTTQV TEPSCGDKDS RYAPQIISEQ
TAFLITDALK SVIWGGGNWS KGTGWNGTAW RAARVVKRHD IAGKTGTTNE SRDTWFSGFN
PKLATTVWVG FDDHSKELGR TSWNANAAKD QISAAEAGAK TAGPGWNEFM KNALSGTPEA
PTTPPEGIIS VRIDLATGKL SRKTDYTSRF EYFVSGTEPK EFATEAEEVN DIFIEDSTEE
LFQ
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