| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4269 |
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| Symbol | |
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| ID | 5611407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5238775 |
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| End bp | 5239353 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640935229 |
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| Product | fimbrial assembly family protein |
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| Protein accession | YP_001476001 |
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| Protein GI | 157377401 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3166] Tfp pilus assembly protein PilN |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.434726 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAACA TAAACCTTTT ACCCTGGCGC GAAGAAGCGA GAGAAAAGCA AAAGAGAGAT
TACATTGGCA TATTAGCGTT AGTTTTTCTT GGTTCTTCAC TGATTGTTTT TCTTTCGTTA
AGTGTTCTTG ACATGATGAC GGATAATCAA AAGTCGAGAA ATGCCTACCT GCAGAATGAA
ATTCAGCTTC TGGAAAAACA GATCGCCGAA ATAAAGCAGA TACGAACACG GAAAAAAGAT
ATTGAGCGCC GTACTGAAAT TATTTTAAAT TTACAGCAAT CCAGAAACTT ACCTACTCAT
GTGTTAGATG AGCTCGTACG TATCGTTCCA CCTGGGATTT ACCTTTCCAG TATTGAAAAG
AAAGGGAGTT TATTGTGGAT AGAGGGACGC AGTGAATCCA ATAATAATGT GGCAAACATG
ATGAGAAAGG TGAAAACGTC TAAATGGCTA CTGGATCCCA ATATGCAGTC TATTGTTGCT
CACAGCGAAG AATTGAGACA GTTACAACGA TTTAGTTTGA AAGTGACGAT CAGTGAAGTT
GATAGTATGG ATAATTCAGA CCAGGGAGCG AGTAAATGA
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| Protein sequence | MANINLLPWR EEAREKQKRD YIGILALVFL GSSLIVFLSL SVLDMMTDNQ KSRNAYLQNE
IQLLEKQIAE IKQIRTRKKD IERRTEIILN LQQSRNLPTH VLDELVRIVP PGIYLSSIEK
KGSLLWIEGR SESNNNVANM MRKVKTSKWL LDPNMQSIVA HSEELRQLQR FSLKVTISEV
DSMDNSDQGA SK
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