Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4259 |
Symbol | |
ID | 5611588 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5229898 |
End bp | 5230572 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640935219 |
Product | ribulose-phosphate 3-epimerase |
Protein accession | YP_001475991 |
Protein GI | 157377391 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0110433 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCCAT TTCTTATTGC TCCTTCTATC TTATCTGCCG ACTTTGCCCG CTTAGGTGAG GATGTCGATG CTGTCCTCAA TGCTGGTGCC GATGTGGTTC ACTTTGATGT TATGGATAAT CATTATGTTC CTAACCTGAC TATTGGCCCT ATGGTATGTC AGGCATTGCG TGATTATGGC ATCACAGCTG ATATCGATGT TCACCTGATG GTAAAGCCCG TTGACCGTAT GATTCCTGAT TTTGCTAAAG CCGGGGCTAC ATTCATCACA TTCCACCCGG AAGCGTCTGA GCACCTGGAC AGAAGCTTAC AGCTAATAAA AGAGTCAGGT TGTAAAGCCG GTTTAGTATT TAATCCGGGT ACTCCACTGC ATTACTTGGA CCATGTCATG GATAAGCTGG ATGTCATCTT GTTGATGTCG GTTAACCCGG GGTTCGGTGG CCAATCCTTT ATTCCATCGA CACTGGATAA GCTGAGACAA GTTAGAAAGT TAATCGATGA CAGTGGTTAT GACATTCGCC TCGAGGTAGA TGGCGGTGTT AAAGTCGATA ATATTGGCGA GATTGCCGCA GCGGGTGCCG ACATGTTTGT GGCCGGTTCT GCGATCTTTA ATAAGCCTGA CTACAAAGCT GTTATCGATG AGATGCGTGT CGAGTTAGCT AAAAGCGAGT CATAA
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Protein sequence | MRPFLIAPSI LSADFARLGE DVDAVLNAGA DVVHFDVMDN HYVPNLTIGP MVCQALRDYG ITADIDVHLM VKPVDRMIPD FAKAGATFIT FHPEASEHLD RSLQLIKESG CKAGLVFNPG TPLHYLDHVM DKLDVILLMS VNPGFGGQSF IPSTLDKLRQ VRKLIDDSGY DIRLEVDGGV KVDNIGEIAA AGADMFVAGS AIFNKPDYKA VIDEMRVELA KSES
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