| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4217 |
|---|
| Symbol | |
|---|
| ID | 5611790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5181357 |
|---|
| End bp | 5181701 |
|---|
| Gene Length | 345 bp |
|---|
| Protein Length | 114 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640935176 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001475949 |
|---|
| Protein GI | 157377349 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3339] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATC TGAATAAGCC AAACAGTGAT GATTACAGTG ACCATGATTT CTGGCTCAAG
GTAAAACAGT TTGCTAAGAA AGCGGGCCGC GAAGTGATAG ACAATGCTTT ATGCCTCTAC
TATGCGGCTC AAGGCCCCGA TACGCCTAAA TGGGCCAAGA CCGTGATCTT TGGCGCTTTA
GCCTATTTTA TTGCGCCTCT CGATGCCATT CCCGATCTGA CCCCCTTCGT AGGTTTTACC
GATGACCTCG GCGCACTTGC CGCGGCTCTG GCCATGGTCA GCGTATATGT CGACGATGAT
GTGGAGAAAC AGGCCGCAGA GAAGTCATCG GCCTGGTTCG ATTAA
|
|---|
| Protein sequence | MSDLNKPNSD DYSDHDFWLK VKQFAKKAGR EVIDNALCLY YAAQGPDTPK WAKTVIFGAL
AYFIAPLDAI PDLTPFVGFT DDLGALAAAL AMVSVYVDDD VEKQAAEKSS AWFD
|
|---|
| |