Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4186 |
Symbol | |
ID | 5612167 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5145143 |
End bp | 5146276 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640935145 |
Product | hypothetical protein |
Protein accession | YP_001475918 |
Protein GI | 157377318 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.13826 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAAAA AATCCACCAA GTTCATGTTG TCGATGGTGG CAACAGCGAT AGCACTATCC GGCTTTAACG CCAGTGCAGA AGAGCAGGAA GACGGGATCA ACATAGGCGG CGCGGTACGC GTTAACTATG GCTACAAAGA TTACAGTGAA GCCTCGAAGG ATAAGGGTGG CGATCTGACT TTCGATATGG CTGCCATCAA GTTTAACGGT AAGAAAGGTG ACTGGGGGTT AGCCGCAGAA TACCGCTTCA CCTCTAGCAC TGACTACATC AAATACGGCT ACGGTATCTA CAATATCGAT CCTGAGTGGC AGCTACAGTT TGGTATCAAC AAGGTGCCAT TCGGTAACCG CGAATTTATC TCTAACAGCT GGTGGTTTGG TATTCCTTAC TACTTAGGTT TTGAAGACGA CCATGATGTC GGTGTTAAGG CCGTTTATAA CAGCGGCGGC TGGCACACAG ACTTAGCCTT CTACAAGAAT GCTGAGTATG GTCCAACAGA AAATAAGCGT TACGCGACCG ATCTATACAC AGGCACCATC AATGGCACCG AGTATAACAA CGAAGAGACA AACCAGGTTA ACCTGCGTCA GACCTTTACT GCTGAACATG AAGGCGGCTC AACGACCTTC GGTGGCTCTG TTCAATATGG TCAGATCTAC AACAACAAAA CCGGAAATAC CGGCGATAGC TACGCCGCGG CTCTTCACTT AGACAGCAGC TACAATGGCT GGAACCTGCA GCTACAGGCG ATGCAATATG AATACGATGC GGCCGATTCG GTCGATTCGA ACAAGATTGG TGTATCGGTA GTAAGCTGGC AATACGAGAT CGCCTCTAAG GGCCAGGCCT ATAGCGCCAA CATAGCTAAG ACCTTCAAGA CTGACTGGGG TAGTGTGAAG TGTTATAACG ATTTCGGTCT TATGACACCT GACGTCGATG ACAGCAGCTA CGACAACAGC ATGCAAAACG TCACAGGCTG TGCAGTTTCA GCAGGTCCAA CTTACACCAT GATCGACTTC GTCATGGGCA AAAACATGAC CTTCTCAACC GCTAACAATG ACCATGTCGG TCTGCCAGAA ATGGGCGATG ACTGGGACAA ACGCGTCAAC ATCAACTTTG GTTACTACTT CTAG
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Protein sequence | MMKKSTKFML SMVATAIALS GFNASAEEQE DGINIGGAVR VNYGYKDYSE ASKDKGGDLT FDMAAIKFNG KKGDWGLAAE YRFTSSTDYI KYGYGIYNID PEWQLQFGIN KVPFGNREFI SNSWWFGIPY YLGFEDDHDV GVKAVYNSGG WHTDLAFYKN AEYGPTENKR YATDLYTGTI NGTEYNNEET NQVNLRQTFT AEHEGGSTTF GGSVQYGQIY NNKTGNTGDS YAAALHLDSS YNGWNLQLQA MQYEYDAADS VDSNKIGVSV VSWQYEIASK GQAYSANIAK TFKTDWGSVK CYNDFGLMTP DVDDSSYDNS MQNVTGCAVS AGPTYTMIDF VMGKNMTFST ANNDHVGLPE MGDDWDKRVN INFGYYF
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