| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4127 |
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| Symbol | |
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| ID | 5610842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5044653 |
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| End bp | 5045558 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935082 |
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| Product | tyrosine recombinase XerC |
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| Protein accession | YP_001475859 |
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| Protein GI | 157377259 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4973] Site-specific recombinase XerC |
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| TIGRFAM ID | [TIGR02224] tyrosine recombinase XerC |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.442069 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGTCG AATGGTTTCA GAAATTTGAG AGTTACCTCA GTGCAGAGCG TCAACTATCT
AAACATACGG TACGTAACTA TCTGTATGAG TTAGAGCGGG TCAGTAAGCG ACTGGATGAA
ACCACCTCAT GGCTTGATGT TACCCGAGAG CAACTTCAAG GAGCATTGAG CCAGATTCAC
CGGCAAGGGC TCAGCCCTCG TTCCATATCA CTCACACTGT CTGCGATAAA ACAGTTCTGT
GACTTCCTGC TTGCAGAGGG AGCTATCCAG GCTAACCCGG CAATGAGTCT GAGTGCCCCA
AAGCAAAATA AACCTCTGCC CAAAAATATG GATCTTGATT CGGTCACTCA TCTTCTGGAG
ATAGATGGCG ATGATCCATT GAGTGTGCGT GATAAAGCCA TTATGGAGCT ATTTTACTCC
TCAGGATTGC GTCTGGCGGA ACTCGCTGCC TTGGATGTAA AGGATATCGA CTTTGGTGAG
AGGCAGGTAA AGGTGATGGG GAAGGGGAGC AAGGAGCGAA TCGTGCCTAT CGGTAATATG
GCGATGAATG CTATCGAATG CTGGTTAACC TGCAGAAAGG GGATAGTCTG TGAAGATGGT
GCCCTGTTTG TTACCGGTAA GGGTAAGCGT TTAGCACATC GAAGTATTCA GGCCAGATTG
GCAAAGTGGG GGCAGGAGCA GGCGCTGAAT ATGCGCGTTC ATCCCCATAA GCTCAGACAC
TCTTTTGCAA CCCATATGCT AGAATCCAGC GCCGATCTCA GGGCTGTTCA GGAGTTACTC
GGACATGCCA ATTTATCGAC GACACAGATA TACACCAGCT TAGACTTCCA GCATTTAGCG
AAAGTCTATG ATGGCGCACA TCCGAGAGCT AAAGCTAAAT CGACAGCGAA AGCAGGAAAA
AACTGA
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| Protein sequence | MDVEWFQKFE SYLSAERQLS KHTVRNYLYE LERVSKRLDE TTSWLDVTRE QLQGALSQIH
RQGLSPRSIS LTLSAIKQFC DFLLAEGAIQ ANPAMSLSAP KQNKPLPKNM DLDSVTHLLE
IDGDDPLSVR DKAIMELFYS SGLRLAELAA LDVKDIDFGE RQVKVMGKGS KERIVPIGNM
AMNAIECWLT CRKGIVCEDG ALFVTGKGKR LAHRSIQARL AKWGQEQALN MRVHPHKLRH
SFATHMLESS ADLRAVQELL GHANLSTTQI YTSLDFQHLA KVYDGAHPRA KAKSTAKAGK
N
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