Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4121 |
Symbol | |
ID | 5611435 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5040325 |
End bp | 5040954 |
Gene Length | 630 bp |
Protein Length | 209 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640935076 |
Product | peptidylprolyl isomerase, FKBP-type |
Protein accession | YP_001475853 |
Protein GI | 157377253 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0545] FKBP-type peptidyl-prolyl cis-trans isomerases 1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0992067 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0728177 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGACA CTAAACCAGT ATCGCTTGCG AATGATGAGC AGAAAGTCAG TTATGGGTTG GGGTGGCAGT TTGGCCGCCA CCTACAAACT CATAACTTTG ACGGATTGGA GATGGAAACC GTTTTTGCCG GAATGTTGGA TTGCTTCCAT GACAGAGCGG CTCCCATCAC AGATCAGCAA GTGGAATCGG CATTTAAAAA TATCGCCGCT CTGGCAGCGG CCATTCGTCA ACGCGAAGCT GATGAAACAG CGGGCCGAAG TCAGGCGTTT ATGTCTGAAA ACGCCCTTAA GCCAGGTGTC GTTATCACAG ACTCCGGGCT GCAATACAAG GTCATAGAGA TGGGTGAGGG GCGAACTGCC GGTCAGGTCG ATAATGTCAT CGTTCATTAC CATGGCATGT TGATCAACGG TGAAGTGTTC GACAGCTCCG TCGAGAGAGG GGAGCCGGTA GAGTTTCCGG TGCAGAGCGT GATCCCCGGT TGGACTGAGG TGTTACAGAT GATGCCGTCC GGTTCTAAGT GGCGAGTATA TGTCCCGTCA GAGCTGGCCT ATGGCCAAGT GGGTAAGGCT CCGAAGATCC CCGGGAATGC CGCCTTGATT TTTGACCTTG AACTGATTGA AGTCGTTTGA
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Protein sequence | MTDTKPVSLA NDEQKVSYGL GWQFGRHLQT HNFDGLEMET VFAGMLDCFH DRAAPITDQQ VESAFKNIAA LAAAIRQREA DETAGRSQAF MSENALKPGV VITDSGLQYK VIEMGEGRTA GQVDNVIVHY HGMLINGEVF DSSVERGEPV EFPVQSVIPG WTEVLQMMPS GSKWRVYVPS ELAYGQVGKA PKIPGNAALI FDLELIEVV
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