| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4111 |
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| Symbol | rho |
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| ID | 5609767 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5028267 |
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| End bp | 5029532 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935066 |
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| Product | transcription termination factor Rho |
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| Protein accession | YP_001475843 |
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| Protein GI | 157377243 |
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| COG category | [K] Transcription |
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| COG ID | [COG1158] Transcription termination factor |
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| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000313563 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATTTAT CAGAATTAAA AGACACGTCG ATTTCAGACT TAGTACTACT AGCCCAAGAA
ATGAAAGTTG AAAATACTGC CCGTGCTCGT AAGCAGGACA TTATATTTTC AATCCTTAAA
GCCCACGCCA AAAGCGGTGA AGATATTTTT GGTGGCGGAG TATTAGAAAT CTTGCAGGAT
GGATTTGGCT TCCTGCGTAG TGCCGACGCG TCTTACCTTG CAGGTCCCGA CGATATTTAT
GTCTCTCCAA GTCAGATCCG TAGATTCAGT ATGCGAACGG GTGATAGCAT TTTCGGTAAG
ATTCGCCCAC CTAAAGAAGG TGAACGTTAT TTTGCACTAC TGAAAGTCTC CGAAGTCAAC
TTTGACAAGC CAGAAAACTC CCGTACCAAA ATCCTTTTCG AAAACCTGAC TCCACTGCAC
GCAGAAGAAC GTATGCGTAT GGAACGTGGT AATGGTTCGA CAGAAGATAT TACCTCAAGA
ATTCTCGACC TCTGCTCACC TATCGGTAAA GGTCAGCGTG GTTTGATTGT TGCGCCGCCT
AAGGCTGGTA AGACACTACT TCTTCAGAAC ATGGCTCAAA GTATCACCTA CAATAATCCC
GATGTGGTAT TGATGGTTCT GCTAATCGAT GAGCGTCCGG AAGAAGTCAC AGAAATGCAG
CGCATGGTTA AAGGTGAAGT CATTGCTTCT ACCTTCGATG AGCCAGCCAG CCGTCACGTA
CAAGTGGCAG AGATGGTAAT CGAGAAGGCA AAGCGTCTTG TTGAGCATAA GAAAGATGTC
GTCATCTTAC TCGATTCAAT CACGCGCCTC GCTCGTGCAT ACAACACAGT TATCCCATCA
TCGGGTAAAG TACTTACCGG TGGTGTCGAC GCTAACGCAC TACATCGTCC TAAGCGTTTC
TTCGGTGCGG CTCGTAACAT CGAGCACGGC GGAAGCTTAA CGATTATTGC AACTGCGCTA
GTTGATACGG GTTCTAAGAT GGATGAAGTC ATCTACGAAG AATTTAAAGG TACGGGTAAC
CAAGAGTTAC ACCTATCCCG TAAAGCTGCT GAAAAACGCG TCTTCCCAGC CATCGACTTT
AACCGCTCGG GTACTCGTCG TGAAGAGAAG CTAACCACGC CGGATGAACT GCAGAAGATG
TGGATCCTAC GTAAGATTCT TAATCCGATG GATGAAGTGA CAGGTATGGA GTTCCTTATC
GATAAATTGG CTATGACCAA GACTAACGAT GAGTTCTTCA AGGCAATGAA GCGTGCTAAG
ACTTAA
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| Protein sequence | MNLSELKDTS ISDLVLLAQE MKVENTARAR KQDIIFSILK AHAKSGEDIF GGGVLEILQD
GFGFLRSADA SYLAGPDDIY VSPSQIRRFS MRTGDSIFGK IRPPKEGERY FALLKVSEVN
FDKPENSRTK ILFENLTPLH AEERMRMERG NGSTEDITSR ILDLCSPIGK GQRGLIVAPP
KAGKTLLLQN MAQSITYNNP DVVLMVLLID ERPEEVTEMQ RMVKGEVIAS TFDEPASRHV
QVAEMVIEKA KRLVEHKKDV VILLDSITRL ARAYNTVIPS SGKVLTGGVD ANALHRPKRF
FGAARNIEHG GSLTIIATAL VDTGSKMDEV IYEEFKGTGN QELHLSRKAA EKRVFPAIDF
NRSGTRREEK LTTPDELQKM WILRKILNPM DEVTGMEFLI DKLAMTKTND EFFKAMKRAK
T
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