| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4101 |
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| Symbol | |
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| ID | 5612171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5015869 |
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| End bp | 5016636 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640935056 |
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| Product | sec-independent protein translocase, TatC subunit |
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| Protein accession | YP_001475833 |
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| Protein GI | 157377233 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0805] Sec-independent protein secretion pathway component TatC |
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| TIGRFAM ID | [TIGR00945] Twin arginine targeting (Tat) protein translocase TatC |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.84957 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGCAAC AGCAGCCGCT AATTAGCCAC TTGCTCGAAT TACGTAACAA GTTGCTAAAA
GCCATTGGCA GTGTACTTCT AGTGTTTATC GCTATGGTCT ATTGGGCCAA CGATATCTAC
CACTACATGG CAACACCGTT AATGGAAGTT TTGCCAGATA CAAGCAGCAT GATTGCAACC
GATGTCGCTG CTCCGTTTTT TGCTCCATTT AAACTTACAC TGGTACTGGC ATTTTTCATC
GCTATTCCTT ATGTGTTATA TCAGGTCTGG TCATTTATTG CCCCTGGACT GTATAAGCAT
GAGAAGCGCC TGATGATGCC GCTTCTGGCC AGTAGTACAC TTCTCTTCTA TCTGGGAATC
GCTTTCACTT ACTACATCGT TTTCCCGGTA GTATTTGGCT TCTTTACCAG TGTTGCTCCG
GAAGGTGTTC AGGTTGCAAC TGATATCAGT AGCTATCTGA GCTTCGTACT TAAACTTTTC
TTTGCTTTTG GCTTAGCTTT TGAGATCCCA ATTGCCGTCA TACTCCTATG CTGGGCTGGT
GTGACGACTC CTGAAGAACT TAAAGCAAAA CGTCCCTATA TCGTTGTCGG TGCCTTTGTT
GTCGGTATGA TGCTGACGCC GCCAGATATC ATTTCTCAGA CAATGTTAGC AATTCCTATG
TTGATATTAT TCGAAGGGGG ATTGATTGCG GCTCGTTTCT ACAGTAAAAA GGATGATGAA
GACGAAGAAG AGCAAGAGAA GCAGGATAAA CCTGGCCAGG AAAGCTAA
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| Protein sequence | MSQQQPLISH LLELRNKLLK AIGSVLLVFI AMVYWANDIY HYMATPLMEV LPDTSSMIAT
DVAAPFFAPF KLTLVLAFFI AIPYVLYQVW SFIAPGLYKH EKRLMMPLLA SSTLLFYLGI
AFTYYIVFPV VFGFFTSVAP EGVQVATDIS SYLSFVLKLF FAFGLAFEIP IAVILLCWAG
VTTPEELKAK RPYIVVGAFV VGMMLTPPDI ISQTMLAIPM LILFEGGLIA ARFYSKKDDE
DEEEQEKQDK PGQES
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