| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4083 |
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| Symbol | |
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| ID | 5613777 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4998830 |
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| End bp | 5000161 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640935038 |
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| Product | outer membrane efflux family protein, putative |
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| Protein accession | YP_001475815 |
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| Protein GI | 157377215 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA CAATAATTGC CAGCCTATTG TTAGCTTATT TAACAAGTGG AGCCGCGAGT
GCTCAGGCTG CCATAGAAGC AGACTTACAA GCCCCTTCTC TGGCTTATAC ACCATGTACA
TCGGTGAACA ATAGTGCCAA TCAAACCCAT TTCGAGTCTT GGCTACCTGG CCTGATGCAG
AGCTTCAACG CCCTGCCTGA AGTTGCCGCT CAACAGGCGA GACGCACTCA AGCCGAGTTG
AGTATTAAGG CGGCCGATCA GGCGGTCTAT AATCCCGAGC TGGGTTTGGA TTACCAGAAT
GCAAGCGAAG ATACCTATAC GCTCGGCATC AGCCAGACTA TTGATTGGGG GGATAAGCGT
GGTGCGGCGA CACGTAAAGC CCAGCTTGAG TCTGAAATTA TGCTCTCCGA TATCTCGTTG
GAGCGAAGTC AGATGTTGGC CGGTTCGATA CAGGCTCTTG TCGAACAAGC TCAAAACCGA
AAGGCGGTAG TGTTTCAAAA ACAGCAACTG CAAGCGGCTA AGACGCAATT TGAGATCGCC
AAGCAGCAGA TGCAGGTCGG TGATCTATCG GCTGTAGAAC TTAAATTGAT TCAACTTGAT
GTGGCGAGTA AAGCCGCCGA CTACGCAATA GCCGAGCAAG CCTCCATCAC CTCGGATGCC
AATGTGTTGA TGTTACTCGG GGATAGCGAA CTACCCTTTA GCGGGTTTCT CGGAGCGTTA
ACGCTTCCAA AGGTATCGAC ACAGGTAGAC CCTGAGTTAC CCGCTTTGAA GAGTGCTTAT
CAGCAAGTGC TATTAGCCAA GGTGACGGTT CAACAGGTGA AGGCCGACAC ATCAGCCGAT
CCCACCGTCA GCTTAAATGC CGAGCGCGAG GGTGAAGAGA ACAAGTTCGG GGTTGGTATC
TCAATTCCCT TGCAGGTCCG CAATAATTAC AGTGAAACCT TAGCCGTGGC CAGCCAGGAC
ATTGCCGTTG CCGAGCAAAC TTATCTGGCG CGTGAAAGGG TGCTGATTCA ACAGCAGAAG
AAGTTCCATT TAAGTCTGCC AAGACTCACC GAGCGCTATC AAGATTGGCG TGAATTGGTG
CTTACTTCGG GTCAGGAAGC CGCATCGGCA TTGGCTCAAC AATGGCGAGC CGGTGACATC
AATACCAGTG ATTATCTGCA AAGTCAGCGT CAGCTTTCAA GCAGTTACCT TGTCGGCTTG
ACTCTGGAGA CGGCTCTGTA TCAGAGCTGG CTGGAGTGGA TGGGCGCCAG CGGGCAACTT
GAATCATTTC TTCAGGCACA ACTTTCAGCT CAGCCCTCGC ATTCAGCATC AAATATGGCT
GCAGCACTGT AA
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| Protein sequence | MKKTIIASLL LAYLTSGAAS AQAAIEADLQ APSLAYTPCT SVNNSANQTH FESWLPGLMQ
SFNALPEVAA QQARRTQAEL SIKAADQAVY NPELGLDYQN ASEDTYTLGI SQTIDWGDKR
GAATRKAQLE SEIMLSDISL ERSQMLAGSI QALVEQAQNR KAVVFQKQQL QAAKTQFEIA
KQQMQVGDLS AVELKLIQLD VASKAADYAI AEQASITSDA NVLMLLGDSE LPFSGFLGAL
TLPKVSTQVD PELPALKSAY QQVLLAKVTV QQVKADTSAD PTVSLNAERE GEENKFGVGI
SIPLQVRNNY SETLAVASQD IAVAEQTYLA RERVLIQQQK KFHLSLPRLT ERYQDWRELV
LTSGQEAASA LAQQWRAGDI NTSDYLQSQR QLSSSYLVGL TLETALYQSW LEWMGASGQL
ESFLQAQLSA QPSHSASNMA AAL
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