Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4040 |
Symbol | metL |
ID | 5610112 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4948243 |
End bp | 4950630 |
Gene Length | 2388 bp |
Protein Length | 795 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640934995 |
Product | bifunctional aspartate kinase II/homoserine dehydrogenase II |
Protein accession | YP_001475772 |
Protein GI | 157377172 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0460] Homoserine dehydrogenase [COG0527] Aspartokinases |
TIGRFAM ID | [TIGR00657] aspartate kinase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACGTT GTCATTTGCA TAAATTTGGT GGTTCCAGTC TGGCGGACGC TGACTGTTAC CGCCGTGTGG CTCATATCCT TCTCACTCAC GGCAATAGCG ACGATCTTGT CGTAGTCTCC GCCGCGGGTA AGAGCACCAA CTTTCTTTAT AAATTATTAG AGTTAAAAGA TACGGCTCAG CTCTGGCAAG AAGAGCTGCA GGTGTTGATT AGCTTTCAAC AAAACCTGAT CGAGCAGCTG CTTTCTAATG AACAGGCCAC AAGTTTAAGA GAACGTTTGT CGATCGATAA GTACCAGCTT ATCAGTCTGT TTTCACAGGA TGAACTGAAG GAATACGAAC GCAGCGAAGT GGTGAGCTTC GGTGAGCGCT GGTCCGCGCG CCTGTTGGCG GCCTTGCTCA GGGAGTCTGG TGTTGCTGCG AGCGATGTCG ATGCCAGAAC CTTGTTATTG GCCGACGAAG GTGGCGTGCC GCAGATAATG CTGGTCGAGT CCCGTCAGCG AGTTCGGCAA GTACTTAATG ACCATCCCAA TGAAAGATTA ATTATCACGG GTTTCATCTG TGCCAACAGT CGAGGAGAAA CTCTGTTGCT GGGACGTAAT GGGTCCGATT ATAGCGCCAC CCTGATCGCC AGTCTGGCCG CCATCGAGCG GGTGACCATC TGGACCGATG TCGAAGGGGT ATTCAATGCC GACCCCAATA AGATCAACGA TGCTAAATTG CTGAAGAGTC TCTCTCTGGA TGAGGCAAAC CGTCTCGCTC ATCTGGGCTC GCCGGTACTG CATAATCGAT CTCTGCAACC TCTTTTCGAT ACCGAAGTCA GCTTAGCCGT ACGTTCGAGT TATGCATCCC ACACCGACTT TACCCTGATT GCGCCCAGGA GTTCTTCGGC CAGTGCGCCG GTGGTGACCA ATCTGGCCAG TGTGTCGCTA TTTAACTTCA GAATCACCAC CGAGATCTCC AACTTAGCCG AATTATTGGC AGCGTCTGGG CTAAACCCCT TGGCTCATTG GCAGCTTGCC CATGGCCGGG TTGAGTTGGC CTTCACCCAT GAGAATCAGC AGCAGGTGCG AGCTATCCTC GAATCTGAAG TCCCGGGGGT ATCGGATCTG CTTCTACGTG AGAATCTTGG CCTGGTCGCC TTAGTCAGCG CCGATGCCGA GCTCTATCGT CGTGGCTTTG CCCGGCTGCT GAGTCGTGAT GCCAGGCCGT TATTCAATGA CGGCTTGAGT CTGGTCACCT TAGTTCCCTG TGCCAATGTC AACTTACTTA CTCAGAAAGT ACATAGGCGC TGTGCCGGTC CACGTAAACG TATTGGGGTG CTATTGCTCG GTGTTGGGAA TATCGGAGAG GCCTGGGTCG ATCTATTTAC GCGCGCACGT ACATCCCTGA ATAAAGAGTT GGAAGCCTGT GTCGAACTGG TCGGCTTATT GAGTTCAAAG AAAGCCCTGT TGAAAGAGGA GGGGATAGGT TTAAGCTCCT GGAAACAAGA GTTTGAACAG CAAGCGACCC CATGGTTGTA TGATCACCTG TTTGAACAGC TCCAAGCACT GGATTGCGAT GAAATTATCG CACTGGATAT CAGCGCGAGT GCCGAGCTGA CGCTGCAGTA TCCTGAATTT TTTGCCCGTG GTATTCATGT GGTCAGTGCG AATAAGTTAG CAGGTTCCGG TCCATTGGCT TTCTATCGTG AGCTGAAGCA GCAACTTGGA AACCGCAGGC TATTTTGGCG CTATAACGCC AGCTGTGGTG CGGGATTACC TGTGCAGCAC GCACTGAATG ATCTACACAA CAGCGGCGAT AGTATCGAGG CTGTTGGTGG CATCTTTTCC GGAACCCTCT GTTGGTTGTT TGAAAATTAT GATGCCAATA AGCCCTTCTC AGAGTTAGTC CTGGAAGCTA AAGGCTTAGG TATTACCGAA CCCGATCCCC GGGATGACCT TTCCGGCCGC GATATGCAAC GTAAGTTGTT AATACTGGCC CGTGAAATTG GCCATGAGAT AGAGCTTGAA GATATTGAGC TTAACTCCTT AGTGCCATCG GCATTAGCCG ATATTCCTCT GGAGCAGTTC CTCGGACGTA TTACTGAGCT CGATGGTGAG ATGCTACAGC AGTTTCAGGC AGCGGCGGAG CAGGATAAGG TGCTTCGTTA TGTTGCCGGG CTGGATGTGA TCGAGGGACA GTTAAAGGCG GCAGTTGGCA TTCAATGGGT CGATAGAGAG CATGCCTACG CTAACCTGAC ACCGGGCGAT AATGTCTTCG TGATCCGCAG TGCCTTCTAT CAGGATAACC CTCTTATCAT CAGAGGTCCC GGAGCCGGGC GTGAAGTTAC CGCGGCTGCC GTGCAGTCGG ATCTGGCACA GATCTGCAGA GATCTGTTAC AGGAGTAA
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Protein sequence | MARCHLHKFG GSSLADADCY RRVAHILLTH GNSDDLVVVS AAGKSTNFLY KLLELKDTAQ LWQEELQVLI SFQQNLIEQL LSNEQATSLR ERLSIDKYQL ISLFSQDELK EYERSEVVSF GERWSARLLA ALLRESGVAA SDVDARTLLL ADEGGVPQIM LVESRQRVRQ VLNDHPNERL IITGFICANS RGETLLLGRN GSDYSATLIA SLAAIERVTI WTDVEGVFNA DPNKINDAKL LKSLSLDEAN RLAHLGSPVL HNRSLQPLFD TEVSLAVRSS YASHTDFTLI APRSSSASAP VVTNLASVSL FNFRITTEIS NLAELLAASG LNPLAHWQLA HGRVELAFTH ENQQQVRAIL ESEVPGVSDL LLRENLGLVA LVSADAELYR RGFARLLSRD ARPLFNDGLS LVTLVPCANV NLLTQKVHRR CAGPRKRIGV LLLGVGNIGE AWVDLFTRAR TSLNKELEAC VELVGLLSSK KALLKEEGIG LSSWKQEFEQ QATPWLYDHL FEQLQALDCD EIIALDISAS AELTLQYPEF FARGIHVVSA NKLAGSGPLA FYRELKQQLG NRRLFWRYNA SCGAGLPVQH ALNDLHNSGD SIEAVGGIFS GTLCWLFENY DANKPFSELV LEAKGLGITE PDPRDDLSGR DMQRKLLILA REIGHEIELE DIELNSLVPS ALADIPLEQF LGRITELDGE MLQQFQAAAE QDKVLRYVAG LDVIEGQLKA AVGIQWVDRE HAYANLTPGD NVFVIRSAFY QDNPLIIRGP GAGREVTAAA VQSDLAQICR DLLQE
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