Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3959 |
Symbol | napH |
ID | 5613113 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4839110 |
End bp | 4840018 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640934913 |
Product | quinol dehydrogenase membrane component |
Protein accession | YP_001475691 |
Protein GI | 157377091 |
COG category | [C] Energy production and conversion |
COG ID | [COG0348] Polyferredoxin |
TIGRFAM ID | [TIGR02163] ferredoxin-type protein, NapH/MauN family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.041404 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAGAA GCACAGTGAA AAAAGAGGCT ATAACCGATG CAATGAACGA CTCCTCTAAA GCAGGATTCG CTCAGGCGGC GATCGATGAA CTGGGATGGT GGCGTGCTCA CAAATTCCTG TTTCTCAGAC GCGCCAGCCA GCTGAGTGTA TTAACCTTGT TTGCCATTGG CCCCTGGTTT GGCTTATGGA TCCTGAAGGG AAACCTCTCG TCCAGCGAGT TACTCGGTAC TGTGCCATTG TCGGATCCAC TTGTGACACT GCAAGTCTTG ATGACGGGAC ATATTCCTGA GTTAACCCTG ATTCTCGGTG CCCTCTTTAT CACAGTGTTT TATGTGATAG CGGGTGGCCG GGTGTTCTGC AGCTGGGTGT GCCCTGTCAA TCTGGTCACC GACAGTGCGA GTTGGTTAAG ACGTAAAATG AATTTGCCTC GTTTAGGCGA GATGCCAAGA AATTTACGTT ACTACCTGCT GGGTCTGGTT ATTGTGTTAC CTCTGCTGAC AGGCATCACC GTTTGGGAAT GGGTCAATCC GGTTCCGATA CTCTACCGCG CCGTGTTATT CGGTGCCGGT AGCGGACTGT GGATCTTGTT GGCCATCTTC CTGCTCGACC TGTTTATCAG CGAGCGTGGA TGGTGTGGGC ATCTGTGCCC CACTGGTGCT ATGTTTGCCC TATTTGGCAA ATTGAGCCCG GTTAAAGTAT CGGCCGTTAA CGCCAAGGCC TGTGATAACT GTATGGATTG TTTCGATGTT TGCCCCGAGA GACAGGTGCT AAAACCTGCG CTTAAAGGGA AACAGATGAT GATAACCGAC AGTGATTGCA CTCAATGTGG CCGCTGTATC GATGTCTGCG CCCAACGCGT TTTCCAGTAT CAAAATAGAA TTGCCCTAAA GGCGGAGAAC AACCAATGA
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Protein sequence | MIRSTVKKEA ITDAMNDSSK AGFAQAAIDE LGWWRAHKFL FLRRASQLSV LTLFAIGPWF GLWILKGNLS SSELLGTVPL SDPLVTLQVL MTGHIPELTL ILGALFITVF YVIAGGRVFC SWVCPVNLVT DSASWLRRKM NLPRLGEMPR NLRYYLLGLV IVLPLLTGIT VWEWVNPVPI LYRAVLFGAG SGLWILLAIF LLDLFISERG WCGHLCPTGA MFALFGKLSP VKVSAVNAKA CDNCMDCFDV CPERQVLKPA LKGKQMMITD SDCTQCGRCI DVCAQRVFQY QNRIALKAEN NQ
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