| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3955 |
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| Symbol | |
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| ID | 5613855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4833917 |
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| End bp | 4835098 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640934909 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475687 |
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| Protein GI | 157377087 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5621] Predicted secreted hydrolase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.779914 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.022032 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATATCTC TACCCACGCG ACCTATATCA AGCGTATTGG CTACCTTCAG CCCAAGGCTC
TTGGTGTTAG TTATCTTCAT CTCCGCACTC CTGCTGGCAG CATGCTCAGA GCCGAAATCA
TCCGGTAACG AAGGGATAGA TACCGGGTCG ATGGGAAACC TGCTGGGCAA TAAGAGTGAA
GGTTTTACCC CTGTGTTGCC GGGCGGGAGC ATTACTTTCC CCGCCGATCA CCAGCCCCAT
GAAGGATTCA GGCAGGAGTG GTGGTATCTG ACCGCTAACC TTAAGACAGA GCAAGGGAAG
CCGCTTGGGC TACAATGGAC TCAATTTCGA ATCGCGCTGA GTCCTCCTGA TCGCAGCTTG
GAACAACTAA CCGACAGCAG AGGCTGGGCG ACAGATCAGC TCTATATGGC CCACAGCGCC
GTCACCACAC AAACAAGCCA TCTCGCCAGC GAGCGCTGGT CCAGAGCACA CCCGCAACTC
GCGGGGGTCG ATACCTCCCC CTTTACGGTT AAGCTAGATA ACTGGCAGTG GCAGTCTCAG
GGAGAAGCGC TCTTTCCTGC CAGCCTGACG GTGAGTGATA ACAAGTTTGC CTATCGACTC
ACACTCTCCA CCCACTCCCC CTATCAGCTT CAGGGCGAGA GAGGTTTTAG CATCAAGAGT
GCCGATTGTT CGGTGGCATC TTACTACTAC AGCCAGCCGT TTATTGAGGT TGAAGGCTGG
GTCACTCCCG AGAAGAATAG CGAAAATGAA GGAGATAGTG AGAGACAAAG GGTCAGTGGC
AAGGCGTGGT TAGACAGGGA GTGGAGTTCG CAGTTTCTCA ACCGCTCTCA ACAAGGTTGG
GACTGGTTCT CCCTTAGGCT GAATGATGGC TCGACCTTGA TGTTATTCCA GCTCAGGGGG
GCGCAGAACT TTTATAGTGC CAGACGTATG TTCGTAAACG GTAGTGGCCA TAATATTGAA
TCAGGGATGA TACAGATGAC CGCCATCGAC TGGCACCGGA TAGGTGATAA TCATTATCCT
GTTAGCTGGA AGATAGCGAT CCCATCCGAG CAGATTGAGA TCACGACCCA CTCGTTAAAT
CCCAATGCCA ATATGCCCCT CAGCGTCAGT TACTGGGAGG GACCCATTAA GATTCAGGGT
AGCCACAGCG GCGAGGGCTA CATGGAGCTC ACCGGCTATT AG
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| Protein sequence | MISLPTRPIS SVLATFSPRL LVLVIFISAL LLAACSEPKS SGNEGIDTGS MGNLLGNKSE
GFTPVLPGGS ITFPADHQPH EGFRQEWWYL TANLKTEQGK PLGLQWTQFR IALSPPDRSL
EQLTDSRGWA TDQLYMAHSA VTTQTSHLAS ERWSRAHPQL AGVDTSPFTV KLDNWQWQSQ
GEALFPASLT VSDNKFAYRL TLSTHSPYQL QGERGFSIKS ADCSVASYYY SQPFIEVEGW
VTPEKNSENE GDSERQRVSG KAWLDREWSS QFLNRSQQGW DWFSLRLNDG STLMLFQLRG
AQNFYSARRM FVNGSGHNIE SGMIQMTAID WHRIGDNHYP VSWKIAIPSE QIEITTHSLN
PNANMPLSVS YWEGPIKIQG SHSGEGYMEL TGY
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