Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3928 |
Symbol | |
ID | 5612581 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4798053 |
End bp | 4799336 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640934882 |
Product | (S)-3-amino-2-methylpropionate transaminase |
Protein accession | YP_001475660 |
Protein GI | 157377060 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAACA GCAATTTACA GGCGCGCAAA GCCAAGGTGA TGCCCCGTGG CCAGGGTAAT GTCTATCCTG TGTATGTCGA GCGTGCTAAG AATGCCGAAC TTTGGGATGT GGAGGGCAAG CGATATATCG ATTTCGGAAC GGGGATCGCG GTGTGTAATA CCGGCCATAG CCATCCTAAA ATTGTAGCTG CTGTTAAGGC TCAGTTAGAT AAGTTCAGCC ATACCTGCGT TATGATCAAC CCCTATGAGT CGGCGGTAGA ATTGGCCGAA AAACTCACGG CGATCGCGCC GGGTGATAGC GAAAAGAAAG CCATCTTTGT GACAACTGGG GCGGAAGCGG TAGAAAACTG TGTCAAGATT GCCCGCGCCC ATACCGGTCG AAGAGGGGTT ATCGCCTTTA ACGGTGGTTT CCACGGTCGA ACTAACTTAA CGATGGCATT AACAGGCAAG ATCAGTCCCT ATAAGCAGCT GTTCGGCCCA TTTGCCGGTG ATATTTACCA TGCCCCCTTT CCGATGGCCT TCCATGATGT TTCGGTAAAG GATTCGCTTA AGGCGCTGGA AAACCTGTTT AAGGTGGATA TTGCTCCGAG CGATGTCGCG GCCATAATCG TAGAGCCTGT GCAGGGCGAG GGCGGCTTCT ATGCCGCGCC AAGTGAGTTT TTACAGGCAC TGCGTCGGCT ATGCGATCAA CATGGTATCG TCTTGATTGC CGATGAGATC CAAACCGGAT TTGGCCGTAC CGGTAAGATG TTCAGTTTTG AACACGCGAA CGTCGAAGCA GATCTGATGA CCATGGCGAA AGGGATCGCC GGTGGCTTTC CTATCGCGGC CGTCGTGGGC AAGAGTGAGA TTATGGACGC GCCTCTGCCC GGAGGTTTAG GTGGTACCTA TGGTGGCTCT CCCGTGGGCT GCGTCTCTGC GCTGGCGGTA TTGGAGGTGA TGGAGGAGGA GAACCTGGTT CAGCGAGCAT CGCTTATTGG CAGTATCTTC AATGAGCATC TTACTTCACT TCAAAATAGA TATCCGGATC TGATCGGTGA AGTTCGTCAT CAGGGGGCGA TGATCGCCCT GGAGCTGGTC ATCGATGGAG ATGCTGACAA GCCAAATACT GAGCTCACTC AAGCTATTAT CGGTAAAGCG GCGGAGCATG GGCTGATTCT CCTGGCCTGC GGTTTCTATG GCAATGTGAT TCGTTTCTTG CCGGCTCTGA CTATCTCAGA TGAGATAATC TATGAAGGCT TAGATAAGTT CAATAGTCTG TTTAATGAGC TTGCGGGAAG TTAA
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Protein sequence | MTNSNLQARK AKVMPRGQGN VYPVYVERAK NAELWDVEGK RYIDFGTGIA VCNTGHSHPK IVAAVKAQLD KFSHTCVMIN PYESAVELAE KLTAIAPGDS EKKAIFVTTG AEAVENCVKI ARAHTGRRGV IAFNGGFHGR TNLTMALTGK ISPYKQLFGP FAGDIYHAPF PMAFHDVSVK DSLKALENLF KVDIAPSDVA AIIVEPVQGE GGFYAAPSEF LQALRRLCDQ HGIVLIADEI QTGFGRTGKM FSFEHANVEA DLMTMAKGIA GGFPIAAVVG KSEIMDAPLP GGLGGTYGGS PVGCVSALAV LEVMEEENLV QRASLIGSIF NEHLTSLQNR YPDLIGEVRH QGAMIALELV IDGDADKPNT ELTQAIIGKA AEHGLILLAC GFYGNVIRFL PALTISDEII YEGLDKFNSL FNELAGS
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