Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3881 |
Symbol | |
ID | 5611042 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4737847 |
End bp | 4739082 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640934835 |
Product | putative aliphatic amidase expression-regulating protein |
Protein accession | YP_001475613 |
Protein GI | 157377013 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAAGG AAAGAGAGTT CGCCCTCCAA TGGTATCTCA GCAGATGGAG ATGGTTAGCG ATAGCCATAC TTTTTGCTAC GGGCATCGTC GCCTGCGGTA CAGAAGATGA TGCCACCATT AAGGTAGGTA TCTTGCACTC TATGAGCGGC ACTATGGCGT TCAGCGAACG GGATCTGGTC GATGTGCTCA CCATGGCAAT CGAAGAGATA AATGCCAATG GTGGGGTATT GGGAAGACAG CTAGAGCCTG TTTTAGCGGA TGGTGCATCG AACTGGTGGC AGTTTTCAAA GGAGGCGGAG CGACTCATTG TTCAGGAGCG GGTAGCAGTA CTCTTTGGTT GCTGGACCTC GAGTAGCCGT ATCGCGGTTA AGCCTATTGT TGAACGTTAC GATCATTTGC TCTTCTATCC ACTGCAATAT GAGGGGCTGG AGCAGTCGCC GAATATTATC TACACGGGCG CCACACCGAA TCAGCAGATC ATCCCCGGTG TTCACTGGGC GCTGGAAAAT ATCGGCCAGG GCGTCTACCT CCTTGGTTCC GATTATATCT TTCCCCGAGC CGCGAATATG CTGATTAAAG ATCAGCTGAA AAACCGTGGC ATAGAGCCTC TGGGGGAGAT GTATCTGCCT ATGGGATCAT CAGATATCTC CCGTGCAATT GAAGATATTC GCAGGTTAAA GCCGGATCTG GTGTTCAATA CTATTAACGG AGACAGTAAT ATCGCATTTT TCAATGGTCT GAATGGGATA AAGGAGACCA AGGTGGTCTC ATTCAGCATT GCCGAACCAG AGGTATCGGC CATCGGCATC GAACAAATGT TGGGGCATTA TGCCGTCTGG AACTATTTCC AGAGTATAGA AAGCCCGGAG AATCGGCAAT TTGTCAGTGC ATTTAAAGCG CGCTTCGGTA AAGACCGGGT CGTTAACGAT CCTATGGAGG CAACCTATAT CGGTATTAAG TTGTGGGTCC AGGGGGTGAC TGCGGCTGGT ACCTTCGATC CACTGAGGGT TAAACATGCC CTTGGTTATC AGAGTCTCAA TGCGCCTCAA GGTATCGTCT CGGTCGACAT GGGCAGTCAA CACCTGTGGA AAACGGTCCG CATCGGACGG GTACGAAGCG ATGGACAGTT TGAAATAGTC TGGCGAAGTG ATTCCCCCAT CAGGCCCACA CCTTTTCCTA AATATCACAG TCGGTCGATC TGGCTGCAAC GCTTGCAGGA GCTCAAGTAT CGATGA
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Protein sequence | MAKEREFALQ WYLSRWRWLA IAILFATGIV ACGTEDDATI KVGILHSMSG TMAFSERDLV DVLTMAIEEI NANGGVLGRQ LEPVLADGAS NWWQFSKEAE RLIVQERVAV LFGCWTSSSR IAVKPIVERY DHLLFYPLQY EGLEQSPNII YTGATPNQQI IPGVHWALEN IGQGVYLLGS DYIFPRAANM LIKDQLKNRG IEPLGEMYLP MGSSDISRAI EDIRRLKPDL VFNTINGDSN IAFFNGLNGI KETKVVSFSI AEPEVSAIGI EQMLGHYAVW NYFQSIESPE NRQFVSAFKA RFGKDRVVND PMEATYIGIK LWVQGVTAAG TFDPLRVKHA LGYQSLNAPQ GIVSVDMGSQ HLWKTVRIGR VRSDGQFEIV WRSDSPIRPT PFPKYHSRSI WLQRLQELKY R
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