Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3876 |
Symbol | |
ID | 5611517 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4728365 |
End bp | 4729690 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640934830 |
Product | integral membrane sensor signal transduction histidine kinase |
Protein accession | YP_001475608 |
Protein GI | 157377008 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000107272 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATATCGA TTCGAACTAA GCTCAGTCTC TGGCTTACGG GGTTAGTCAT CTTATCGACG GTCGTTGGCA TTATCTTTTT CGAGTCTATG TTGAGACAGG CATTCCACGA TTCGATTATC GCGAGATTAC AGGAAGATAT TGAACAGGTT ATGCTGGCCA CTCACCTTCA GGGAGATGAG CTAAGCATAG ATCAAAGCCA GCTATCAGGC TTCTATAAGC CGGTATTTTC AGGCCGTTAT TATCAGCTCA ATCTGCCGGA CCAGGAGATC CGCTCGAGAT CGCTTTGGGA TCAGAAACTC GAAATTTTGC CACTGAAAAA GGGGGATAGT CGTGTCTGGC AAACCAAAGG GCCCCAAAAT CATGATATCC AACTCCTCTC TATCGGACTC AGCTCTGACT CTCTCAATGT CGATGCCACT CTAACCGTTG CACAAGACCT GAGTATTGGG CGTAAAATTT TTACTCAAAT TTACGGCACA AAACTGGGTG TCAACCTGGC GATGTTATTA ACCATGATAG CCGGCATTTT TCTGGTATTG AGACAATCTT TTAAGCCAAT TAACCATATG CAATCGGCCC TCTCAAAACT CAGAGAGGGA GAGATAACTT CGTTAGAGAT CGAAAAGATC CCTCCGGAGT TGCAGGGGTT AGCCTCGACC TACAATGAGC TGCTGCAGTA CTCAAGTAAG CAACTCGAAA GAAGCCGCAA TAATATCGGT AATCTAAGCC ATGGGTTAAA GACGCCGCTG GCGGTGATGC AGCAACAGGT AGAAGCTTTG GGACTCAAAG ATCCCGATGC GGCGATAGCG CTTCAAAAGC AGCTGGACTT AGTCCACAAG ATGATCGAGA GAAAACTCGC TGCCGCTCGG ATCACCGGAG AGATGTTACC GGCGGCTCAG ATGCAACTCC CCAAAGATTT AGACGATCTT TGCCAGACAT TGAGCAAGGT ACATTTTCAT AAGCAGATTC AGTGCAATAT CCATATTCCG GAGAAACTGT TAAGACTGCC CCTTCATAGG GAAGATGGCA TGGAGCTCAT CGGAAACTTA CTCGATAATG CCCACAAATG GGCTAAATCA CGGGTGGAGA TAGGTGCAAG CATTGAAGAT GACGCCATCT GTCTCATCAT TGAAGATGAC GGCCCCGGTG TCGCGAGTGA GGAACTGGCT CAACTGACCA GTCGTGGTAA ACGCTTAGAT GAGGCGACCA TGGGTCATGG CCTGGGGCTC TCTATCGTAA AAGATATTGC CGAACAATAT GAGATTGATT TGCAATTTAC CCATAGCGAA CAATTCGGTG GGTTAAAAGT CAGTTTAACC TTCTAA
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Protein sequence | MISIRTKLSL WLTGLVILST VVGIIFFESM LRQAFHDSII ARLQEDIEQV MLATHLQGDE LSIDQSQLSG FYKPVFSGRY YQLNLPDQEI RSRSLWDQKL EILPLKKGDS RVWQTKGPQN HDIQLLSIGL SSDSLNVDAT LTVAQDLSIG RKIFTQIYGT KLGVNLAMLL TMIAGIFLVL RQSFKPINHM QSALSKLREG EITSLEIEKI PPELQGLAST YNELLQYSSK QLERSRNNIG NLSHGLKTPL AVMQQQVEAL GLKDPDAAIA LQKQLDLVHK MIERKLAAAR ITGEMLPAAQ MQLPKDLDDL CQTLSKVHFH KQIQCNIHIP EKLLRLPLHR EDGMELIGNL LDNAHKWAKS RVEIGASIED DAICLIIEDD GPGVASEELA QLTSRGKRLD EATMGHGLGL SIVKDIAEQY EIDLQFTHSE QFGGLKVSLT F
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