Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3865 |
Symbol | |
ID | 5611605 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4715919 |
End bp | 4716890 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640934819 |
Product | alpha/beta hydrolase fold |
Protein accession | YP_001475597 |
Protein GI | 157376997 |
COG category | [R] General function prediction only |
COG ID | [COG0429] Predicted hydrolase of the alpha/beta-hydrolase fold |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCACT CTTTTTCACC TCCATGGTGG GCAAAAAGCC CCCATGTTCA GACTATTCTA CCGGTATTCA CCAAGGTGGA CAGACCAGTG CTGAGCCGAG AACGTCTTGA GCTCAGTGAC GGAGATTTTA TCGATCTGGA CTGGTTAAGC TTTCCCCAAG ATAGCCAAAA TATTCTGGTT ATCATTCATG GGCTGGAAGG TAGTGCCGAC TCTCATTACG TACGCAGGAT CTTGCAGGAG TGCCGCGATA GAGATCTATG TGCAGTCGTT CACCATCACA GAAGCTGCTC AGGAGAACCG AATCGTCTGG CCCGAAGCTA TCATAGTGGT GATACCCAAG ATCTGCAGAC ACATCTGACC CACTTAAAGT CGCGATATCC AAATTCAAAG ATAAGGGCCG TAGGTTACAG CCTCGGCGGC AACGTACTGA CTAAATATCT GGGCGAGCAT GATGAGGCGA GTCTCATCGA ACGTGCCGTT GTAGTATCGG CACCGTTAAA ACTTGCAGCA TGCGCTAAGA GGTTGGAAAG AGGATTTTCC AAGGTTTACC AAAGCTACCT GATAAAGCAG TTACAGCAGA AACTCACCGA AAAGGTCAAA GACAAACAGC TTGGACAGAG CATGCCGATC TCGATGTCGC AGATAGATGA GCTCAACACC TTCTATAGCT TCGACCATAG AGTAACGGCT CCGCTTCATG GGTTTACGGG AGTGGATGAC TACTACCATA GAGCCAGCGG TATGGACTAC CTAAAACATA TTCGTCAGCC TACGTTAGTC ATACATGCAG AGGATGATCC TTTCATGACC CGGGACGTGA TCCCAGCCGC AGATAAGTTG TCTCCTCAGG TGGTCTATGA ACTGCATAAT CGCGGTGGAC ATGTCGGCTT TATCGAGGGT GGCACACCAT TAAAACCTAA ATACTATCTG GAAAGGCGGA TCCTCACCTT TCTCTCACAC AGTGGTACCT AA
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Protein sequence | MTHSFSPPWW AKSPHVQTIL PVFTKVDRPV LSRERLELSD GDFIDLDWLS FPQDSQNILV IIHGLEGSAD SHYVRRILQE CRDRDLCAVV HHHRSCSGEP NRLARSYHSG DTQDLQTHLT HLKSRYPNSK IRAVGYSLGG NVLTKYLGEH DEASLIERAV VVSAPLKLAA CAKRLERGFS KVYQSYLIKQ LQQKLTEKVK DKQLGQSMPI SMSQIDELNT FYSFDHRVTA PLHGFTGVDD YYHRASGMDY LKHIRQPTLV IHAEDDPFMT RDVIPAADKL SPQVVYELHN RGGHVGFIEG GTPLKPKYYL ERRILTFLSH SGT
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