| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3846 |
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| Symbol | |
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| ID | 5611701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4687890 |
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| End bp | 4691084 |
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| Gene Length | 3195 bp |
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| Protein Length | 1064 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934800 |
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| Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | YP_001475578 |
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| Protein GI | 157376978 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.128071 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000551465 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAAGCGA TTACTATGTT CAAAGCGAGT GAAGTTCTGA CTGGTCACTA TGACCAAGCT
AATCTCGATG AGCTATTTAC AGCCATCACC AATAACTACA TTGTCGATGA AGATGAATAT
CTATCTGAAC TTATCAAACT CGTACCTTCG AGTGACGATG AAATCCAGCG TGTTACCAAG
CGTGCCCATG ATTTAGTAGC TAAAGTTCGC CAATATGACA AGAAAGGCCT AATGGTTGGC
ATCGATGCCT TCCTACAGCA GTACAGCCTG GACACGCAGG AAGGTATTAT CCTCATGTGT
CTGGCTGAAG CATTATTACG AATTCCAGAC GGCGCGACGG CCGATGCACT TATCCAGGAT
AAACTTTCCG GGGCTAAGTG GGATGAGCAT ATGAGTAAGA GTGATTCGAC GCTCGTCAAC
GCCTCGACCT GGGGCCTGAT GCTGACAGGA AAAATCGTCA CCCTGGATAA AAATATCGAC
GGCAAACCCA GCAATCTTCT GAACCGTCTG GTCAACCGAG TCGGCGAGCC CGTTATCCGT
CAGGCTATGC TGGCAGCCAT GAAAATAATG GGTAAACAGT TTGTTTTAGG TACCTGCATC
AAAGATGGCC TGAAAAACAG TGAAGCGAAC CGAAAGATTG GTTATACCCA CAGCTACGAT
ATGCTGGGTG AAGCCGCGCT GACCATGGTC GATGCAGACA AATATTTCAG TGAATATTCG
GCAGCCATAG CCGCCCTTGG CGCACAAACC TATGATGAGA GTGTGGCGCC ACGCCCCACC
ATCTCCATCA AGCTCTCCGC ATTGCACCCA AGGTATGAAG TTGCCAATGA AGATCGCGTG
CTGACCGAGC TTTATGACTC CTTAATCAAG CTGATTAAGA AAGGGCGTGA ACTCAATGTA
GGCATAGCGA TCGATGCCGA AGAGATGGAC AGACTCGAGC TGCACCTAAA ACTTTTCAAG
AAACTCTATA ACTCCGATGC AGCTAAAGGC TGGGGTCTTT TGGGTATCGT AGTACAGACC
TATGCTAAAC GTGGCCTTCC GGTACTATGC TGGCTGACAC GCCTTGCCAA AGAGCAGGGG
GATGAGATCC CGGTTCGCCT CGTGAAGGGC GCCTATTGGG ACAGCGAGCT TAAATGGGCA
CAGCAAGCCG GTGAAGCGGG CTACTCACTC TTTACCAGGA AGGCGGGAAC GGATGTCTCC
TACCTTGCCT CGGCCAGGTA CGTCCTGTCC GATGCGACCC GCGGCGCCAT CTACCCTGAA
TTTGCGACCC ATAATGCACA ATCGGTAGCC GCCATTATGG ACATGGCCGG CGATCGCCGA
TTTGAATTCC AGCGTCTGCA CGGCATGGGG CAGGAGCTAT ACGATACTCT GCTGGCCGAA
AGCCCGGACA CCCGAATCCG TATCTACGCA CCGATTGGTG AGCACAAGGA GCTACTGCCT
TATCTGGTAC GTCGCCTACT TGAAAACGGT GCCAACACAT CGTTTGTTCA TAAACTGGTA
GACCCTAAGG TCGCCATCGA CTCACTGGTG GTTCACCCGA TAAAGACACT TCAGAACTAT
AAAACCCTAT CTAATAATAA GATCGTTCAA CCCGCCGATA TTTTTGGGGA AGAGCGTAAA
AACTCAAAGG GACTCAACAT GAACATCATA TCTGAATCAG AGCCTTTCTT CGCTGCACTC
GAGAAGTTTA AAGACACTCA GTGGAACGTC GGGCCTTTGG TCAATGGTGA GCTTTTAAGT
GGCGAAACGA AAGAGGTCGT CAGCCCGTTC GATACCACCA AGCTAGTCGG TAAAGTCGCC
TTCGCTAATA ATCAAGCCAT AGAGCATGCC TTAGCGGGCG CCGATAACGC CTTCTCGAGC
TGGTGCAATA CACCGGTTGA AGTGCGTGCC ACAGCACTAC AGAAACTGGC CGATCTTCTC
GAGGAGAATC GTGAAGAGCT GATCGCACTC TGTACCCGAG AGGCGGGTAA GAGCATTCAG
GACGGTATAG ATGAGGTCCG TGAAGCGGTC GACTTCTGTC GTTACTATGC CGTACAAGCT
AAGAAGATGA TGGCTAAGCC GGAGCTACTT CCTGGCCCGA CAGGCGAGCT CAACGAGCTG
TTCCTGCAAG GCCGCGGTAT CTTTGTCTGT ATCAGCCCGT GGAACTTCCC GCTGGCCATA
TTCTTAGGCC AGGTCGCCGC GGCGCTTGCT GCCGGTAACA CGGTAGTGGC TAAACCTGCC
GAACAGACTT CTATTGTCGG TTTCCGCGCC GTTCAACTCG CTCATGAAGC AGGGATCCCG
AAAGAGGCAC TTCAGTTCCT CCCAGGCACA GGTGCGACAG TCGGTGCCGC TATCACTTCA
GATGAGCGTA TCAATGGTGT CTGTTTCACC GGCTCTACGG GAACGGCCAA GCTGATTAAC
CGCACTCTGG CAAACCGCGA AGGCGCGATC ATCCCGCTTA TCGCCGAGAC AGGCGGTCAA
AATGCCATGG TTGTCGATTC GACATCTCAG CCAGAACAGG TTGTTCATGA CATTATCGAC
TCATCATTTA CCAGTGCCGG TCAACGTTGC TCTGCGCTGC GCGTACTCTT CCTACAGGAA
GATATCGCAG ACAGAGTTCT GGAAGTAATG AAAGGCGCCA TGGATGAGCT CACGATTGGC
GACCCAAGTT CGGTGAAAAC CGATGTAGGT CCGGTGATCG ACGCCACGGC ACAGGCTAAC
CTTAATGCCC ATATCGATCA TATCAAGCAA GTTGGCACCC TGCTTAAGCA ACTGGAGCTA
CCTACGGGCA CCAAGAATGG TCACTTCGTT GCCCCGACTG CCGTCGAGAT AGATTCCATC
AAGGTGTTGG AGAAGGAGCA TTTCGGCCCA ATCCTGCACG TGATACGTTA CAAGGCCGCC
GATCTGCATA AGGTGATCGA TGAGATCAAC AGCACCGGGT TCGGTCTGAC TCTTGGCATA
CACAGCCGCA ACGAAGGCCA CGCCCTCGAA GTGGCCAGCA AGGTCAAGGT AGGTAATGTC
TACATCAACC GTAATCAGAT TGGCGCAGTT GTTGGTGTTC AGCCATTCGG TGGACAAGGC
CTGTCTGGCA CGGGTCCTAA AGCCGGTGGT CCACACTACC TGACGCGCTT TATCACCGAG
AAGACTCGTA CCAATAACAT CACTGCGATT GGCGGGAATG CAACCCTACT TTCACTGGGT
GACAGCGAAG AGTAA
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| Protein sequence | MEAITMFKAS EVLTGHYDQA NLDELFTAIT NNYIVDEDEY LSELIKLVPS SDDEIQRVTK
RAHDLVAKVR QYDKKGLMVG IDAFLQQYSL DTQEGIILMC LAEALLRIPD GATADALIQD
KLSGAKWDEH MSKSDSTLVN ASTWGLMLTG KIVTLDKNID GKPSNLLNRL VNRVGEPVIR
QAMLAAMKIM GKQFVLGTCI KDGLKNSEAN RKIGYTHSYD MLGEAALTMV DADKYFSEYS
AAIAALGAQT YDESVAPRPT ISIKLSALHP RYEVANEDRV LTELYDSLIK LIKKGRELNV
GIAIDAEEMD RLELHLKLFK KLYNSDAAKG WGLLGIVVQT YAKRGLPVLC WLTRLAKEQG
DEIPVRLVKG AYWDSELKWA QQAGEAGYSL FTRKAGTDVS YLASARYVLS DATRGAIYPE
FATHNAQSVA AIMDMAGDRR FEFQRLHGMG QELYDTLLAE SPDTRIRIYA PIGEHKELLP
YLVRRLLENG ANTSFVHKLV DPKVAIDSLV VHPIKTLQNY KTLSNNKIVQ PADIFGEERK
NSKGLNMNII SESEPFFAAL EKFKDTQWNV GPLVNGELLS GETKEVVSPF DTTKLVGKVA
FANNQAIEHA LAGADNAFSS WCNTPVEVRA TALQKLADLL EENREELIAL CTREAGKSIQ
DGIDEVREAV DFCRYYAVQA KKMMAKPELL PGPTGELNEL FLQGRGIFVC ISPWNFPLAI
FLGQVAAALA AGNTVVAKPA EQTSIVGFRA VQLAHEAGIP KEALQFLPGT GATVGAAITS
DERINGVCFT GSTGTAKLIN RTLANREGAI IPLIAETGGQ NAMVVDSTSQ PEQVVHDIID
SSFTSAGQRC SALRVLFLQE DIADRVLEVM KGAMDELTIG DPSSVKTDVG PVIDATAQAN
LNAHIDHIKQ VGTLLKQLEL PTGTKNGHFV APTAVEIDSI KVLEKEHFGP ILHVIRYKAA
DLHKVIDEIN STGFGLTLGI HSRNEGHALE VASKVKVGNV YINRNQIGAV VGVQPFGGQG
LSGTGPKAGG PHYLTRFITE KTRTNNITAI GGNATLLSLG DSEE
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