Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3842 |
Symbol | |
ID | 5611794 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4682871 |
End bp | 4684373 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640934796 |
Product | adenylate cyclase |
Protein accession | YP_001475574 |
Protein GI | 157376974 |
COG category | [S] Function unknown |
COG ID | [COG3025] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.023324 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000000503049 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGACGCCG AGATAGAACT AAAATTATTT TTTCAATTAG AACAACAAGA AACCTTAATT CACTTGCTGG ATAGTTTACC TCACTCTGAG CCCAAAGGGG TAAAGAAACT CATCAATAGT TATTTCGATA CCTCCGATCT TCAGCTGAGA AAATGGGATA TGGGGCTTAG AGTCAGAAGT TGTGATGGTG AGAGAGAGCA GACAATAAAA ACGGCCGGCA GTGTGATCGG AGGGATCCAT TCGCGGCCGG AATTCAATGT GGCTATCGAG CAAGATACAC CAGATCTCAG TAAATTTCCT GAAAAAATAT GGCCTGAACT GTCTAAACTT TCATCAGTGC AATCTGAATT GGTCTGTCTG TTTAATACCG ATTTTGTCAG GCGAAGATGG CATATATATG TCGGTGACAG CTTAGTCGAG CTCGCCTTAG ATATTGGTCA GGTGAGCGTC AAAAGAGAAG GGAAAGTGAT ATCAGAGCCT ATTTGTGAGC TCGAATTTGA ACTTATGGCA GGTGAAACAT CGGCACTTAT TCAGTTAGGA TTATTGGTTG CCGAGCAGAT CCCGGTACGT TTAGGTAAGG CGAGTAAGGC ACAAAGGGGA TATCGTTTAG CCGCACAGGC GAGCCCTCTG AGCCTGGAGG CATTAGATTT TATTGCATTA GTACCAGAGC AAGATCTTAA ACACACCTTT ATCGCGCTGT TGAGCACCGG TCTTGAGCGT TGGCAGTTAC TCGAAGCCAT GATTCTCGAA TCCGGTATCA AGGATGATGA ACAAGCCCCT CACCTTTGCT ACAGGCTTAG GGCATGTGTT CGTCTGCTCA GATGTACACT GGCGCAATTT AATCTGCTTG ATGACAAGTT GGCGTCTAAG TTTGATTGTA TCGAAGGGCA TCTGGATTTT ATTGAAACGG GTTTGAGTCT GGTCGAAATT ATCGATCAAA ACAGTTTACT GATCGCTAAA CTCCCTCAGG AAAAACGGCT AACGGCGGCG ACCTTGGCTC AGTTGAAAGG TTTATCGATT CCACAGCTTA TAGACAAAAT GTTGAATGAT ACCTGCTATG GAGGCCTTCA ATTAGCACTC GTTGATCTGC TGCTTGCTTT TCAGGCGGGT AAAAAGGTCA TAGATAAAAG GCTGGAGCTG CAGGAGTTTG CCGATAAGAT GCAGGAAGCC TCATGGCAGA AAATCGTTAA ACTTATGCCC TCTAGCGAAG ATCTCAGCAG TCAGGAATAC CAATCTTTTG CACGTGCCCT GGATGAGAGT ATTTTTGTCG GAGTAGCATA CGGTGCCCTA TATCCAACGA AAGCCAGAGA TCTGTTCAGG ACTCCGTGGC AAGATCTTGT CTTGGGAATA AGGACATTAG CGGCATATCG GCAACTGGCA GAGTTGAGTG AGTCAGAAGC TATCGATATT TCGGACTGGT TGCTTAATAA GGAACATAGC CTGCTGTTTG CGATGGAGCA CTCCAGACGC TCGGCGTTAA AGAACGAACC TTATTGGCGC TAG
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Protein sequence | MDAEIELKLF FQLEQQETLI HLLDSLPHSE PKGVKKLINS YFDTSDLQLR KWDMGLRVRS CDGEREQTIK TAGSVIGGIH SRPEFNVAIE QDTPDLSKFP EKIWPELSKL SSVQSELVCL FNTDFVRRRW HIYVGDSLVE LALDIGQVSV KREGKVISEP ICELEFELMA GETSALIQLG LLVAEQIPVR LGKASKAQRG YRLAAQASPL SLEALDFIAL VPEQDLKHTF IALLSTGLER WQLLEAMILE SGIKDDEQAP HLCYRLRACV RLLRCTLAQF NLLDDKLASK FDCIEGHLDF IETGLSLVEI IDQNSLLIAK LPQEKRLTAA TLAQLKGLSI PQLIDKMLND TCYGGLQLAL VDLLLAFQAG KKVIDKRLEL QEFADKMQEA SWQKIVKLMP SSEDLSSQEY QSFARALDES IFVGVAYGAL YPTKARDLFR TPWQDLVLGI RTLAAYRQLA ELSESEAIDI SDWLLNKEHS LLFAMEHSRR SALKNEPYWR
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