Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3813 |
Symbol | |
ID | 5613326 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4647077 |
End bp | 4648003 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640934767 |
Product | lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase |
Protein accession | YP_001475545 |
Protein GI | 157376945 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1560] Lauroyl/myristoyl acyltransferase |
TIGRFAM ID | [TIGR02207] lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00031853 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGGTAGAGA AAGCCCAATT TTCAGCGCAT TTATATCACC CCAAATACTG GCTGCTTTGG TTCGGTGTCG CTTTGATGCG CCTCACTCAA CTCCTGCCCC TTCAGATACA GATGAAGCTG GGCGCCATGA TAGGCAGATT GGCTAAAACC CTTATGGGCA GTCGGGTCAA TACGGCTAAG CGAAATCTGG AACTTTGCTT TCCAAAGATG ACTGCCGAAG AGCAACAGGT CTTACTCAAG CGTAACTTCG AAGAGACAGG TAAGGCTATT TTCGACACCA TCAATGCCTG GTGGTGGTCA GATGCAAAAA TACAACAGCA TATGACCATC AAGGGTCAGG AGCATGTGGA GCAAACTCTC AATGACGGCC ACGGCGTAAT TCTGTTTGCA GTTCACTGCC TGCCACTGGA GATGGGAGCC AGAATCTTCG GTCAGTTCCA GCCCGGTGTC GGCGTATACC GCCCACACGA TAATCCCGTG ATGGAGTACC TGCAGGTTAA GGGGCGTCTT CGTTCGAATA AAGCCTTAGT TCCCAAGCGA GATCTTCGAA AAATGGTACG TTGCCTGCGT AACCCCGATG TGATCTGGTA TACCGCCGAT CAAGACTTCG GACGCTCCAG CGCCACCTTT ATCCCCTTCT TCGCCATGCC TGAGGCCGCG ACCATCACAG GTGCAACGAC CCTGGCGCGT CTGGGCAAAG CCAAGGTACT GCCTTTTAGC GTCGAGCGAA ATGCCGATGA TAAGGGTTAC ACCATAGAGA TACTCCCGCC ACTGGATAAC TTCCCCGGCG AAGATGAGAT AGCCGATGCC AAGCGTGGCA ACGGGATCAT CGAACAGATA ATCGACAAGA ATCGCGCCCA ATATATGTGG CTGCACCGCA GGTTTAAGAC TCGTCCGAAT AAGGACGACC CATCGGTGTA TAAGTAG
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Protein sequence | MVEKAQFSAH LYHPKYWLLW FGVALMRLTQ LLPLQIQMKL GAMIGRLAKT LMGSRVNTAK RNLELCFPKM TAEEQQVLLK RNFEETGKAI FDTINAWWWS DAKIQQHMTI KGQEHVEQTL NDGHGVILFA VHCLPLEMGA RIFGQFQPGV GVYRPHDNPV MEYLQVKGRL RSNKALVPKR DLRKMVRCLR NPDVIWYTAD QDFGRSSATF IPFFAMPEAA TITGATTLAR LGKAKVLPFS VERNADDKGY TIEILPPLDN FPGEDEIADA KRGNGIIEQI IDKNRAQYMW LHRRFKTRPN KDDPSVYK
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