| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3792 |
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| Symbol | |
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| ID | 5612220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4621516 |
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| End bp | 4622670 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934746 |
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| Product | putative lipoprotein |
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| Protein accession | YP_001475524 |
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| Protein GI | 157376924 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3489] Predicted periplasmic lipoprotein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCAT TAAAATATTC GGCAATTGCA ATTGCACTTG CACTCATCTC TACATTGGCG
GCTTGCGGTG GTTCCGGCAG CGACGATACG ACCCCTCCGG TCGATGAGTC TAAGTTCGAA
TTTGCGGCGA CTGAGATGAT CACAAACCTG ACCGATGACG TGATAGTCAG TGGTTATGCC
ACTCTGGCGA TGAAAGGTGA GTCGCTGTTA TTGGCCACAC AGACATTGGT CAACACGCCG
ACGCAGGCTA ACTTGCTTGC CGCTCAAGAG GCGTGGAAAG CGGCGCGTCA GCCTTGGGAG
CAAGGTGAGT CGCATATCTT CGGTCCGGTT GACTCTTTAG GTATCGATCC ACACTTAGAT
AGCTGGCCAT TGAATACCAC AGATTTGACC ACCGTTCTGG CTAACAACTC AGGTTTCGAT
GCCGAGACCA TCAAGGGGTG GAACGACGAT GTTCAGGGAT TCCACACCAT GGAGTACCTA
TTGTTTGGTG ATGGGATTGC AGACAATGAG AAAGCGATTG CCGACCTGAC GACTGCCGAA
AATGAGTACC TGATGGGCTT AGCGGAAGTG TTCCGTGATT ACACTAAGGT GCTCGATGAT
GCATGGCAGG TAAGTCATGA CGGACAAAGT GGCAAGGCTT ATGGCGAGCT GGTTAAGAGC
CCGGGTAGTG ACGGCAACAC CTTCTATAGC TCTCAGGTAG GTGTGATCCA GGAGCTGGTG
AACGGCATGA TAGGCATCGT CGATGAGGTG GGCAACGGTA AAATTGCCGA TCCATTCGGC
GTATCGTTAG AGACTGCGGA CACATCAAAG GTGGAATCTC AATACTCCTG GAACTCGCTA
ACAGACTTTA GCGATAACAT CGTCGGTGTT CGTAATGTCT ATCAGGGAGA GTTAACGGGC
GCGAGCGATA AGCAAGGGAT TGTCGATTTC GTTAAAGCGG CCGATGCCAC ATTAGCCGCT
CGTGTTGGCA GCGAGATTGA TGATGCCATT ATTAAGATTC AGGCCATCTC AGGTACAAAC
AACATGCCTT TCCGTCAGGC AATATCAGAT GTTGAGGGGC GCGCCAGGGT TCAAACCGCA
ATCGATGCCC TCTCTAAACT GCAAACCAGC TTAGAGTCCG ACATATTGCC TTTGCTTAAT
GATTGGAAAG TGTAA
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| Protein sequence | MKSLKYSAIA IALALISTLA ACGGSGSDDT TPPVDESKFE FAATEMITNL TDDVIVSGYA
TLAMKGESLL LATQTLVNTP TQANLLAAQE AWKAARQPWE QGESHIFGPV DSLGIDPHLD
SWPLNTTDLT TVLANNSGFD AETIKGWNDD VQGFHTMEYL LFGDGIADNE KAIADLTTAE
NEYLMGLAEV FRDYTKVLDD AWQVSHDGQS GKAYGELVKS PGSDGNTFYS SQVGVIQELV
NGMIGIVDEV GNGKIADPFG VSLETADTSK VESQYSWNSL TDFSDNIVGV RNVYQGELTG
ASDKQGIVDF VKAADATLAA RVGSEIDDAI IKIQAISGTN NMPFRQAISD VEGRARVQTA
IDALSKLQTS LESDILPLLN DWKV
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