Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3746 |
Symbol | |
ID | 5609743 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4561350 |
End bp | 4563953 |
Gene Length | 2604 bp |
Protein Length | 867 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640934700 |
Product | (protein-PII) uridylyltransferase |
Protein accession | YP_001475478 |
Protein GI | 157376878 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG2844] UTP:GlnB (protein PII) uridylyltransferase |
TIGRFAM ID | [TIGR01693] [Protein-PII] uridylyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAGACC CTGATATATC ACCTCAATTC AATGCAGAAA TGGGCATTAC TGATTATAAA AAAGTAATCC AAGATGCTGA CAACTACTTT AATGAAAACT TTACCCACAT TGCTATCGAC GAGATAGTAA AGTTACGCGC TGATTTCTTT GATACTTTAC TTCTCCATCT CTGGAAATGT GCCGATCTCG CTGACGAAGA TATATCTCTC AATGCCGTAG GCGGTTATGG CCGTCAAACG CTACACCTGC ACTCCGACAT TGATATGTGT GTCTTATCTT CCCAAGAGCT TAGCCCTCAT CAAGCCACCC AGATTGGCCA GTTTTTCACC CAACTATGGG ATATTGGGCT GGAGCTCGGC CATAGCGTGC TAGCACTGAA TGAAATTGAT AATGCGTGTG AAGATATAAC CATTGCGACC TCACTGTTTG AGATCCGCCA TTTATCGGGA CCAGAGTCTC ATGCGAATCA GGTCTTAGAC AGACTCTATG GTGATGACCT CTGGAGCAGT GAAGCCTTCT ATAAAGCGAA ATTCAGCGAG CAAGATGTAC GTCATCAAAA GGCGCAGGGC AGTGCTTTTA GCCTGGAACC CAACCTAAAA AATAGCCCCG GTGGCATGCG CGATATCCAA ACCTTGATCT GGGTAACCCG TAAGTATTTT GCTGCAGAGG ATATGGCGGC CTTAAGGCGG TTCGGCTTCT TTACCGCCGA CGAATATGCA GAACTGTTAG AGTCACAGCA TTTTATCTGG CGTACGCGTT GGGCACTGCA CGCAGCGGCG CAGCGTTCTG AGAACCGACT ACTTATAGGT TTGCAAAGTG ATGTCGCCAG GCTGATGGGC TTTGGAGACA ACAGTCACCT CGCTATCGAA AAAATGATGC GTCAGTTATA CCGTGCAATG AGGCGGATTA GCGAACTCAA TCAAATGTTA TTGCAGTATT TTAAAGATGA AATCCTGGTA CAAACAGACA AGAAATCTAT CCCGTTAAAT CAACACTTCG AAATAAATGG TCGACAGATA AATGCTCGCC ATGATGATGT ATTTGTTGAT CGCAAACAGC TTATCGCTCT GTTTATCCAT ATTGCAGAAA ACGCGAATGA TATTGATGGT ATTTCGCCGC AGACGATTCG GTTAATACGT CAGGTCAGAC GACGACTATT AGGTGATCTG CAAGATTTTC ATAGCTGCCG TAAAGAGTTT ATTTCGCTGT TTCGTCATCC TCAAGGCATG GGGCTGGCGC TATCATTAAT GCACAAACAT GGGATCTTAG CGTCATATCT TCCCCAGTGG CGTGAAATTG TGGGTCAGAT GCAGTTCGAC CTCTACCATG TTTATCCCGT TGATGAGCAT ACTCATAAGT TACTCAAAAA CTTATATTCA CTGAACGGCA AATCTGAAAA CCCGTCTCTT GTACAGCCTA GCGCTGTTTA CAAAGCGATA GAGAATAAAG AGGTATTGTT GTTAGCGGCC TTGTTCCATG ATTTAGGCAA GGGACGCGGT GGCGACCACA GTGAATTGGG GGCGGTCGAT GCGCTGCAAT TTGCTAAATT TCATGAGCTA AAACCTTCGC AAGCTAAGGT GATAGCCTGG TTAGTTAAAA ACCATCTATT GTTATCGTTA TCCTGCCAAC GATTAGATAT ATATGACCCT TCGGAAGTTA AAAACCTTGC TAAAGCGATA GGGACTAAAG CCAGACTCGA TGCGCTGTAT TGTTTAACGG TTGCCGACAT TAAGGCGACA AATGATGATC TGTGGACTAA CTGGAAGGCA ACCTTGCTCC GGGATCTCTA TTTGTCGATA AGTTTCGCGC TGCGTAATGG CTTAGAAAAT GTTTTAGAGC AGCGAACTGT CGTCCGTGAA CACAAAAATG AAGCACTAGA ACTGATGGGG GCGAGTGAAA CGCCTGATGT GATCAAACAG CTTTGGAAGC GCTTACCGCT CTCATTTTTC AGTAATGCTC AACCCAGTGA AATAGCCCGT TACTCTCATG CCATGACGCA ACATCCCGCC GATCATGCAC TTATTCTGCT GGATGAAAGC AGTACTAAAG GTAGCAGTGA TCTATTCGTC TACATGAAGG ATAAGCCCGG CCTGTTTGTG ACACTATTTA ATACCTTAGC TTCACTACAG ATCTCAGTTC AGCAAGCGAA TATATCTAAG ACTAAAGATG GTTATGTGGT GGAGTCTTTA AAAATACTGG ATTATGATCA TCACCCAATA AGAACCGCTG GGCGACGTGA CCGTATCAAG CAAAGGCTGA AACAAGTATT GTTTGAAAAT AGAAAGGTGC CTAAACAACG CCGTAATAGC AACATTGGCT CATTCGTCAG TGAGCCTAAA GTCGAGTTCT TGCACTCTCG TAAAAAGGAT AGAACGCTTA TCAGCGTTAC CGCACTCGAT AATCCACAAT TTATGAGTCA CTTCTGTAAC GGCTTCAGGC AGTTTGAACT CAATATTCAC TCGGCAAAAA TAACCACAGT TGGTGAACAG GTTGATAATG TATTTCTTGT CTCTGACAAA GAGGGCCAAT CACTGGATGA TGAGAGCAAA CAAGCGCTAA AATCCTTCTT TGTCGATATC ATTAAAGAAG AGGCGCCTGT TTAA
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Protein sequence | MSDPDISPQF NAEMGITDYK KVIQDADNYF NENFTHIAID EIVKLRADFF DTLLLHLWKC ADLADEDISL NAVGGYGRQT LHLHSDIDMC VLSSQELSPH QATQIGQFFT QLWDIGLELG HSVLALNEID NACEDITIAT SLFEIRHLSG PESHANQVLD RLYGDDLWSS EAFYKAKFSE QDVRHQKAQG SAFSLEPNLK NSPGGMRDIQ TLIWVTRKYF AAEDMAALRR FGFFTADEYA ELLESQHFIW RTRWALHAAA QRSENRLLIG LQSDVARLMG FGDNSHLAIE KMMRQLYRAM RRISELNQML LQYFKDEILV QTDKKSIPLN QHFEINGRQI NARHDDVFVD RKQLIALFIH IAENANDIDG ISPQTIRLIR QVRRRLLGDL QDFHSCRKEF ISLFRHPQGM GLALSLMHKH GILASYLPQW REIVGQMQFD LYHVYPVDEH THKLLKNLYS LNGKSENPSL VQPSAVYKAI ENKEVLLLAA LFHDLGKGRG GDHSELGAVD ALQFAKFHEL KPSQAKVIAW LVKNHLLLSL SCQRLDIYDP SEVKNLAKAI GTKARLDALY CLTVADIKAT NDDLWTNWKA TLLRDLYLSI SFALRNGLEN VLEQRTVVRE HKNEALELMG ASETPDVIKQ LWKRLPLSFF SNAQPSEIAR YSHAMTQHPA DHALILLDES STKGSSDLFV YMKDKPGLFV TLFNTLASLQ ISVQQANISK TKDGYVVESL KILDYDHHPI RTAGRRDRIK QRLKQVLFEN RKVPKQRRNS NIGSFVSEPK VEFLHSRKKD RTLISVTALD NPQFMSHFCN GFRQFELNIH SAKITTVGEQ VDNVFLVSDK EGQSLDDESK QALKSFFVDI IKEEAPV
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