| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3698 |
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| Symbol | |
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| ID | 5613585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4501527 |
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| End bp | 4503440 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640934651 |
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| Product | lipid ABC transporter ATPase/inner membrane protein |
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| Protein accession | YP_001475430 |
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| Protein GI | 157376830 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGGGT TCGGTAAACT CACTCTATCT CTTTTAGTTG TTGCCCCAGG TAAGGAACAC
CCATTGAGTC AAGATACAAC CTCGGCCTCA CCCATGACCG CTAGCTCAAA ACAGAGTAAG
CCGCTTTCTT CAGGCTCCGA TGTAGCTAAG AGGCCGGTTT TACCTTGGAT TGGCACCTTT
CTTCGCCCCT ATAAGTCCAG AGTCATCGCG GCCATTATCT TTTTGTTTAT CGGATCGCTG
GCTTGGCTGT CGCTAGGCCA GGGGGTTCGT CTTATGGTCG ATGAAGGCTT CTTGCAGGAT
AACGGTGACA GGCTCAATGA GATAATCATG CTGGTGATAG GTATTACCGC AATAAGCAGC
TCCGCCATAT TCTGTCGCTT CTATCTGATG ACCTGGCTCG GTGAAAGGGT GAGCGCCGAT
ATACGTTTGA AGGTCTACGA CCACCTATTG AAATTATCGC CGGGCTTCTA TGCAAGGTTG
CGAACCGGAG AGGTGATCTC TCGCTTCACC GCCGATTCGA CTCTGTTGCA GTCGGTCGTG
GGTTCGAGTC TCTCCATGGC CCTGCGCGCG AGCGTTACCG TTGTGGGGGG CATAGTGATG
ATGGCCATCA CCAGCCTTAA GTTGACTGGC CTGGTATTGC TGGCTGTCCC TATGGTGTTA
GGCCCCATCT TCTTCTTTGG CCGCAAGGTG AGGGATCTCT CCCGTCAGAG TCAGGACCGA
GTCGGTGATT TAGGGGCCTA TGTCGATGAG ACCCTGCACG AGATCCATAC GGTGCAAGCT
TATACCCATG AAGATCGTGA CAGAGCCCTG TTTACCGACC GCGTCGAAGC CGTAATGGAC
GCGGCAAAGG GGCGAATTCG ATATCGCTCT ATTTTAATCG CATTAGTGAT GTTTCTCAGC
ATACTCGCAA TAGCGCTGGT GACTTGGGTC GGGGCTCAGG ATGTCATTAC CGGGAGTATA
TCCGGTGGTG AACTGTCGGC CTTTATGTTC TATGCGGTGA TGGTGGCGGG GTCGGTTGCG
ACCATCAGCG AGGTTATCGG AGAGATCCAA CGAGCCGCCG GAGCCTCCGA GCGCTTGATA
GAGTTAGTGG AAACGCCAAT CGATATTCCA ACCGTTGCCG AACCTAAGGC TTTACCTGAA
CTCGTGACGG GTGAGCTCAC CCTTAAACAG GTGCGTTTCT CCTATCAGAA CATTCAAGAA
AATGGTGATG CTAAGGCTAA TGAACCTCAG GTCATAGGTG GGCTGGATAT CGAGGTTAAG
CCCGGTGAAC GCGTCGCGCT GGTGGGCGCG AGTGGTGCCG GAAAGAGCAC TTTATTTGAG
CTGTTACAGC GCTTTTATCA GCTCGATAGT GGCACTATCG AGCTCGATGG CATCGATATC
GCGATGCTGG CCCCCCAGAC GCTGCGCCAA CAGTATGCAT TGGTCCCGCA AGAGTCGGTC
ATCTTTGCCA CCAGTGTGCT GGAAAACGTG CGCTATGGCA GGCTGGACGC GAGTGAAGAG
GAGGTCATCG AGGCCTGTAT CGCCGCGCGC GCTGATGAGT TTATTCAGGA TTTCAGCGAC
GGTTATCAAA CCTACCTGGG AGAGCGGGGT GTCAGGTTAT CGGGTGGACA GAAACAACGG
ATCGCCATCG CCAGAGCCAT TTTAGCCGAC AGGCCTATCC TGCTGCTGGA TGAGGCCACC
AGCGCCCTCG ATGCGATTAG CGAGCAGAAG GTTAAGCAGG CGTTGGATAG CTTGATGGCA
GGCAAGACGA CCTTGATTAT TGCTCATCGA CTGGCAACCG TGCTCAATGC GGATCGTATT
TTAGTGTTAG ATAAGGGGCT GTTAATCGCC AGTGGCACTC ATCAGGAGTT GATGGCGTCG
AGCGAGCTGT ATCGCGAGTT TGCCAGCCTG CAGCTGATCA CAGAGACTGT ATAG
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| Protein sequence | MNGFGKLTLS LLVVAPGKEH PLSQDTTSAS PMTASSKQSK PLSSGSDVAK RPVLPWIGTF
LRPYKSRVIA AIIFLFIGSL AWLSLGQGVR LMVDEGFLQD NGDRLNEIIM LVIGITAISS
SAIFCRFYLM TWLGERVSAD IRLKVYDHLL KLSPGFYARL RTGEVISRFT ADSTLLQSVV
GSSLSMALRA SVTVVGGIVM MAITSLKLTG LVLLAVPMVL GPIFFFGRKV RDLSRQSQDR
VGDLGAYVDE TLHEIHTVQA YTHEDRDRAL FTDRVEAVMD AAKGRIRYRS ILIALVMFLS
ILAIALVTWV GAQDVITGSI SGGELSAFMF YAVMVAGSVA TISEVIGEIQ RAAGASERLI
ELVETPIDIP TVAEPKALPE LVTGELTLKQ VRFSYQNIQE NGDAKANEPQ VIGGLDIEVK
PGERVALVGA SGAGKSTLFE LLQRFYQLDS GTIELDGIDI AMLAPQTLRQ QYALVPQESV
IFATSVLENV RYGRLDASEE EVIEACIAAR ADEFIQDFSD GYQTYLGERG VRLSGGQKQR
IAIARAILAD RPILLLDEAT SALDAISEQK VKQALDSLMA GKTTLIIAHR LATVLNADRI
LVLDKGLLIA SGTHQELMAS SELYREFASL QLITETV
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