Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3617 |
Symbol | |
ID | 5611827 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4404054 |
End bp | 4404935 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640934570 |
Product | oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase |
Protein accession | YP_001475349 |
Protein GI | 157376749 |
COG category | [C] Energy production and conversion |
COG ID | [COG1032] Fe-S oxidoreductase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGATACG AAGGTAAAAT TTATCGACCA CCACCGGAGG CAGGCGCCTA CATTTTACAG TGCACCGTTG GCTGCTCTTA CAACAAGTGT ACCTACTGCT CTATGTACAA AGATGTGCGC TATCGGGTTC GTACCATAGA GGAACTTAAA GAAGATATTC AGATGGCAAA GAAAGCCTAC GGTGCAGGAG TTAATAAAGT ATTCCTGAGC GATGGCGACG CGATTTCGCT GCCAACTGAT ACCTTGTTGG AGATCTTATC TGAACTCTAT GGTGCTTTCC CCGAACTCAC TCACGTCAGT ACCTACGCCG GTCCTCAGAG TACCTTGAGT AAAACCCTGG AGGAGTTAAC CCAACTAAGA AAAGCCGGGT TAACCATGAC CTATCTGGGC GTAGAGTCGG GCTCAGATCG AGTATTAACA GAGGTACGTA AAGGGGTCTC GGCCAAAGAG ATGCTTGAGG CAGGCAGTAA TATTGTAAAA TCAGGAATAA AGCTGGTAGC TATGGTGATG GTCGGTCTGG GAGGCCGTGG CGAGCGCTCT CGTATTCATG CAATTGAAAC GGCGGAGCTC ATCAATCGGA TGAAACCGTA CCTTTTGGGT ACGCTGACCA CTGTTCCGAT GCCGGGCACC GTTCTACACA GACAAATGAG CAAGGGAGAT TTTAAACTGC TCGACCCTTA TGAGGTGCTG GAGGAGATGA AGGTATTACT TGAACATCTC ACACTGCCGG ATCTCTATAT CGATGGCAGG CATGCGTCCA ACCTGATGCC GATAAAAGGC AGGCTCACAG AGATAGGCCC TGACGTAATA AGCGCGATAG ATAAACATCT AAAGCACAGA GATAACAATT TAATTGGCCA GGCATATATA GGCCAATTTT AA
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Protein sequence | MRYEGKIYRP PPEAGAYILQ CTVGCSYNKC TYCSMYKDVR YRVRTIEELK EDIQMAKKAY GAGVNKVFLS DGDAISLPTD TLLEILSELY GAFPELTHVS TYAGPQSTLS KTLEELTQLR KAGLTMTYLG VESGSDRVLT EVRKGVSAKE MLEAGSNIVK SGIKLVAMVM VGLGGRGERS RIHAIETAEL INRMKPYLLG TLTTVPMPGT VLHRQMSKGD FKLLDPYEVL EEMKVLLEHL TLPDLYIDGR HASNLMPIKG RLTEIGPDVI SAIDKHLKHR DNNLIGQAYI GQF
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