Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3604 |
Symbol | |
ID | 5613916 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4391758 |
End bp | 4393158 |
Gene Length | 1401 bp |
Protein Length | 466 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640934557 |
Product | hypothetical protein |
Protein accession | YP_001475336 |
Protein GI | 157376736 |
COG category | [C] Energy production and conversion |
COG ID | [COG1757] Na+/H+ antiporter |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATACTT GGCTTACCTT ACTCCCTCCC TGTATCGCGA TATTACTCGC CATTACCACA AGACAGGTCT ATGTGGCCAT TTTTGCCGGT ATCATGGCAG GCTCAATCCT GCTGTCGCAA AATTTTTTAC TCGGTGTAGC AAACAGTTTT AACGCCATAG CCGATACGTT TCAATCATCA AGCTCAGTGA AGAGCCTGAT CTTTATCCTG ATAATTGGCG CCATCATCAA TGTCATGAGG CAATCAGGCG GTATCGATGC CCTTATCTAT CAAGTCTCCC ACAAATACCA CCTGGTAAAC TCCAAGCCCA GGGCTCAACT TGTCACCTTC GCTTTTGGAT TCTTGATGTG TCTGGAAGGA GTGGGCTCTA TGATGTTAGT GGGTCTCATC GGGCGACCAC TATTCAATAA ATTTAATATC TCCCGTGAAA AGCTGGCATT TGTGGCCAAT AGCACCGGAG CTCCCTTGGC CTGGCTAATG CCCTTCAGTG GCGCAGGTGT TTTTCTTATC AGCTTAATCG GTGCTCAGGT GGAAAACGGC ACCTTAACCG ATAAGCCTAT TACCTATATC TTTGCGGCAT TACCTTACCA AGTCTACTGC ATAGCAATAC TGGCCTTAGT GCCGATATTG GCATATAAGA AATCCGATTT CACAGCCACT GACTTGAGCG ACGCAAAAAA GACCGATTCA GCTTCTAACT CTCTGTCCGA TAATCAGTCC ACCGATCAGT CTGCTCATCA ACCAAGTACT GGAATATGGG CAATGTTACT GCCTATTGTC ATCTTGCTGG GCTCAATTTT TGTCATCAGT TTCGTAACGG GTAAGGGCAA TATTCTGGCG GGTGATATCA GTTCGGCAAT CTATTGGAGC GGCTTTATCT CTCTTATCGG CACGGGCATC TATTTTCGTC TCTGTAAGGT TAAGATGGAC CAATACATTC AATGGTGTAT ACATGGGATG AAGCAGACAC TACCCGCGGT TATCATTCTG GTTTTGGCCT TTTCATTGAG TAATATTACC GGGCAACTCG GAACCGGAAA ATACATAGCC GGCTTTGTCT CCGGCGAGTT ACCTTTATGG CTGGTTCCTG CATCCATCTT TATTATCTGT ATCTTAATCT CATTTTCTAC CGGCAGCTCC GGTGCCACCG TGAGCATAAT GACGCCGATC ATTATTCCCC TAGCCGTGGG TGTCGATATC TCTGTACCCG TAGCGATAGC GGCGGTGATC TCCGGCGCGG TGTTTGGCGA TCAAAGCTCA CCCATTTCAG ACTCGGTCAT AGTGGCGTCA ACGGCTGCCG ATTGTCCGCC ACAGCGGCAC TTTGTGACTC AGTTACCCTA TACTTTGGCT GTGGCACTGC TTTCACTCAC GTTTTACCTT ATCGTCGGCT TTAACACTTA A
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Protein sequence | MNTWLTLLPP CIAILLAITT RQVYVAIFAG IMAGSILLSQ NFLLGVANSF NAIADTFQSS SSVKSLIFIL IIGAIINVMR QSGGIDALIY QVSHKYHLVN SKPRAQLVTF AFGFLMCLEG VGSMMLVGLI GRPLFNKFNI SREKLAFVAN STGAPLAWLM PFSGAGVFLI SLIGAQVENG TLTDKPITYI FAALPYQVYC IAILALVPIL AYKKSDFTAT DLSDAKKTDS ASNSLSDNQS TDQSAHQPST GIWAMLLPIV ILLGSIFVIS FVTGKGNILA GDISSAIYWS GFISLIGTGI YFRLCKVKMD QYIQWCIHGM KQTLPAVIIL VLAFSLSNIT GQLGTGKYIA GFVSGELPLW LVPASIFIIC ILISFSTGSS GATVSIMTPI IIPLAVGVDI SVPVAIAAVI SGAVFGDQSS PISDSVIVAS TAADCPPQRH FVTQLPYTLA VALLSLTFYL IVGFNT
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