Gene Ssed_3604 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3604 
Symbol 
ID5613916 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4391758 
End bp4393158 
Gene Length1401 bp 
Protein Length466 aa 
Translation table11 
GC content47% 
IMG OID640934557 
Producthypothetical protein 
Protein accessionYP_001475336 
Protein GI157376736 
COG category[C] Energy production and conversion 
COG ID[COG1757] Na+/H+ antiporter 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATACTT GGCTTACCTT ACTCCCTCCC TGTATCGCGA TATTACTCGC CATTACCACA 
AGACAGGTCT ATGTGGCCAT TTTTGCCGGT ATCATGGCAG GCTCAATCCT GCTGTCGCAA
AATTTTTTAC TCGGTGTAGC AAACAGTTTT AACGCCATAG CCGATACGTT TCAATCATCA
AGCTCAGTGA AGAGCCTGAT CTTTATCCTG ATAATTGGCG CCATCATCAA TGTCATGAGG
CAATCAGGCG GTATCGATGC CCTTATCTAT CAAGTCTCCC ACAAATACCA CCTGGTAAAC
TCCAAGCCCA GGGCTCAACT TGTCACCTTC GCTTTTGGAT TCTTGATGTG TCTGGAAGGA
GTGGGCTCTA TGATGTTAGT GGGTCTCATC GGGCGACCAC TATTCAATAA ATTTAATATC
TCCCGTGAAA AGCTGGCATT TGTGGCCAAT AGCACCGGAG CTCCCTTGGC CTGGCTAATG
CCCTTCAGTG GCGCAGGTGT TTTTCTTATC AGCTTAATCG GTGCTCAGGT GGAAAACGGC
ACCTTAACCG ATAAGCCTAT TACCTATATC TTTGCGGCAT TACCTTACCA AGTCTACTGC
ATAGCAATAC TGGCCTTAGT GCCGATATTG GCATATAAGA AATCCGATTT CACAGCCACT
GACTTGAGCG ACGCAAAAAA GACCGATTCA GCTTCTAACT CTCTGTCCGA TAATCAGTCC
ACCGATCAGT CTGCTCATCA ACCAAGTACT GGAATATGGG CAATGTTACT GCCTATTGTC
ATCTTGCTGG GCTCAATTTT TGTCATCAGT TTCGTAACGG GTAAGGGCAA TATTCTGGCG
GGTGATATCA GTTCGGCAAT CTATTGGAGC GGCTTTATCT CTCTTATCGG CACGGGCATC
TATTTTCGTC TCTGTAAGGT TAAGATGGAC CAATACATTC AATGGTGTAT ACATGGGATG
AAGCAGACAC TACCCGCGGT TATCATTCTG GTTTTGGCCT TTTCATTGAG TAATATTACC
GGGCAACTCG GAACCGGAAA ATACATAGCC GGCTTTGTCT CCGGCGAGTT ACCTTTATGG
CTGGTTCCTG CATCCATCTT TATTATCTGT ATCTTAATCT CATTTTCTAC CGGCAGCTCC
GGTGCCACCG TGAGCATAAT GACGCCGATC ATTATTCCCC TAGCCGTGGG TGTCGATATC
TCTGTACCCG TAGCGATAGC GGCGGTGATC TCCGGCGCGG TGTTTGGCGA TCAAAGCTCA
CCCATTTCAG ACTCGGTCAT AGTGGCGTCA ACGGCTGCCG ATTGTCCGCC ACAGCGGCAC
TTTGTGACTC AGTTACCCTA TACTTTGGCT GTGGCACTGC TTTCACTCAC GTTTTACCTT
ATCGTCGGCT TTAACACTTA A
 
Protein sequence
MNTWLTLLPP CIAILLAITT RQVYVAIFAG IMAGSILLSQ NFLLGVANSF NAIADTFQSS 
SSVKSLIFIL IIGAIINVMR QSGGIDALIY QVSHKYHLVN SKPRAQLVTF AFGFLMCLEG
VGSMMLVGLI GRPLFNKFNI SREKLAFVAN STGAPLAWLM PFSGAGVFLI SLIGAQVENG
TLTDKPITYI FAALPYQVYC IAILALVPIL AYKKSDFTAT DLSDAKKTDS ASNSLSDNQS
TDQSAHQPST GIWAMLLPIV ILLGSIFVIS FVTGKGNILA GDISSAIYWS GFISLIGTGI
YFRLCKVKMD QYIQWCIHGM KQTLPAVIIL VLAFSLSNIT GQLGTGKYIA GFVSGELPLW
LVPASIFIIC ILISFSTGSS GATVSIMTPI IIPLAVGVDI SVPVAIAAVI SGAVFGDQSS
PISDSVIVAS TAADCPPQRH FVTQLPYTLA VALLSLTFYL IVGFNT