Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3586 |
Symbol | |
ID | 5613521 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4371012 |
End bp | 4372601 |
Gene Length | 1590 bp |
Protein Length | 529 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640934539 |
Product | ABC transporter ATP-binding protein |
Protein accession | YP_001475318 |
Protein GI | 157376718 |
COG category | [R] General function prediction only |
COG ID | [COG3845] ABC-type uncharacterized transport systems, ATPase components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.931394 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTACAC TCCCTAGCGA CAAACCTTTT GCACTCGAAC TGCGTGGCAT CGATAAGCGA TTCGGTGCAG TGCATGCTAA TCGAAATATT GATCTACAAG TTCCTCCCGG CACCATTCAT GGCATTATCG GTGAAAACGG GGCGGGTAAA TCGACCCTGA TGAACATCAT CTATGGGTTT TATACCGCAG ACGCCGGAGA TATTCTGATT GGCGGTGAGG TTCAGAAGCT TGCCAACTCG AAAGAGGCCA TCAGTCACGG TATCGGCATG GTTCACCAGC ACTTCATGTT GGTTGATAAC TTCACCGTTC TTGAAAATGT GATTTTAGGT GCCGAAAATG GTCCTCTGCT CAAGCACAGC CTCCATGATG CCCGCACAGA GTTAGAGCGG TTAGCAAAAG ATTACCAGCT CGAGGTGCCA CTCGATGCCT TAATTGAAGA CTTGCCGGTA GGCCTGCAGC AGAGGGTTGA GATATTAAAA GCCCTGTACC GTGGCGCCAA GATCCTCATT CTTGATGAGC CTACGGGCGT ACTGACTCCC CAGGAAACTG ATCACCTGTT TCATATTTTC GATGCGCTGC GTGAGCAGGG CGTCACAATT TTACTGATCA CCCACAAACT CAGAGAGATC CTGGCCGCCA CAGATAACGT TTCGATCATG CGCCAAGGGG CGATGGTCGC GCACAGAAAA ACGGCAGAGA CGAATAAGGA AGAGCTGGCC GAGCTTATGG TGGGACGAAA GGTACGCCTG AAAGTCGATA AAAATGCGGC TAAACCTGCT CAGGTTGTAC TGTCCACCCA AGATCTGACC TACACAGATG AGATGGGTGT CGATCGTCTC AAAAAGGTCA ACATGGATAT TAAGGCCGGT GAGGTTGTCG GTGTTGCCGG AGTATCCGGT AATGGCCAGT CTCAGTTGAT TAACGCCCTT GCAGGCCTGC TCACACCGAC CAGCGGTTCA ATCACCATCG GCGACACGCG TATCTCTGCC GAGCACCCCA GCTCGCCGGA CGGCGTTCGC CAACTCAGTG TGGGCCACGT GCCGGAAGAC AGACTGGACA TGGGGCTGAT TAAAGCCTTC AGCGCCGAAG AATCAGCCAT CTTAGGGCAT CAGAATCACT CTGATTATAA TGGTCTGGTG ATGAATAAGC CTAAGGCGAT TACACAAGAG TGTGTACGTC TTATGGAGGA GTGGGACGTA AGGCCGCAAG ATCCTAAGCT AAGAAGTTCA CTATTTTCCG GTGGTAACCA GCAGAAGCTG ATCATTGCAC GAGAGGTTGA AAAAAATCCG GATGTACTGC TGATCGGTCA GCCGACCCGA GGTGTGGACA TCGGCGCCAT CGAATTTATT CATAAACGTA TCATCGAACT GAGAGATCAG GGGCAGGGTA TCTTGCTTGT ATCGGTGGAG CTCGATGAGA TCATGGCCCT GTCCGATAGG ATCATCGTGA TGTTCGATGG CAATATCGTG GGTGAAGTGA GCGCCGAGCA GGCGAACGAG AAAATTCTTG GAATGATGAT GGCCAACATA CTACCCGATG AGCTTAGCGA GTCGGATGCA GGACAAACGA CTAACGGAGG TCAATCGTGA
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Protein sequence | MSTLPSDKPF ALELRGIDKR FGAVHANRNI DLQVPPGTIH GIIGENGAGK STLMNIIYGF YTADAGDILI GGEVQKLANS KEAISHGIGM VHQHFMLVDN FTVLENVILG AENGPLLKHS LHDARTELER LAKDYQLEVP LDALIEDLPV GLQQRVEILK ALYRGAKILI LDEPTGVLTP QETDHLFHIF DALREQGVTI LLITHKLREI LAATDNVSIM RQGAMVAHRK TAETNKEELA ELMVGRKVRL KVDKNAAKPA QVVLSTQDLT YTDEMGVDRL KKVNMDIKAG EVVGVAGVSG NGQSQLINAL AGLLTPTSGS ITIGDTRISA EHPSSPDGVR QLSVGHVPED RLDMGLIKAF SAEESAILGH QNHSDYNGLV MNKPKAITQE CVRLMEEWDV RPQDPKLRSS LFSGGNQQKL IIAREVEKNP DVLLIGQPTR GVDIGAIEFI HKRIIELRDQ GQGILLVSVE LDEIMALSDR IIVMFDGNIV GEVSAEQANE KILGMMMANI LPDELSESDA GQTTNGGQS
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