| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3579 |
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| Symbol | |
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| ID | 5611107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4361718 |
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| End bp | 4362341 |
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| Gene Length | 624 bp |
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| Protein Length | 207 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934532 |
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| Product | Na(+)-translocating NADH-quinone reductase subunit D |
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| Protein accession | YP_001475311 |
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| Protein GI | 157376711 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1347] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD |
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| TIGRFAM ID | [TIGR01939] NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.908762 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAGTACTA ATTCAGCAGC TACTCGCGAG ATACTGGTTA GCCCGATTTT CACTAACAAC
CCTGTTGCTA TGCAGGTGTT GGGTGTCTGT TCGGCGCTGG CAGTAAGTAA CTCTTTGCAA
ACCGCATTGG TGATGACATT AGCCGTTACC TTTGTACTCG TGTTCTCGAA CCTGATCATC
TCGATGATCC GCCGTCTGAT ACCAAACAGC GTGCGTATCA TCGCTCAAAT GACCGTGATT
GCGTCCTTGG TGATTATCGT CGATATGGTC CTGCAGGACA TAGCTTATGA GCTATCTCGT
CAACTGTCGG TATTTGTCGG CTTGATCATC ACCAACTGTA TCATCATGGG CCGAGCGGAA
GCGTTCGCCA TGAAAAACCC GCCTCATCTG GCGGTTGTAG ATGCAGTGGG TAATGCCATG
GGTTATGGCG TTATTTTACT CGGTGTTGCC TTCGTGCGTG AACTGCTTGG CAGTGGCACC
CTGTTTGGTC ATGAGATTTT AAAAACCGTT GAAAATGGCG GTTGGTATCT GGCTAATGAG
ATGTTCAAAC TCCCACCTAG TGCGTTTTTC CTGATCGGAT TAATGATCTG GACGATTAAC
GTAATACAGC GCAAACGAGG TTAA
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| Protein sequence | MSTNSAATRE ILVSPIFTNN PVAMQVLGVC SALAVSNSLQ TALVMTLAVT FVLVFSNLII
SMIRRLIPNS VRIIAQMTVI ASLVIIVDMV LQDIAYELSR QLSVFVGLII TNCIIMGRAE
AFAMKNPPHL AVVDAVGNAM GYGVILLGVA FVRELLGSGT LFGHEILKTV ENGGWYLANE
MFKLPPSAFF LIGLMIWTIN VIQRKRG
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